Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1586 | 3' | -52.2 | NC_001347.2 | + | 181505 | 1.09 | 0.008584 |
Target: 5'- gAUGCACUGCGUCAAACUGGUGACGACg -3' miRNA: 3'- -UACGUGACGCAGUUUGACCACUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 96652 | 0.73 | 0.81563 |
Target: 5'- cUGCACcGCGUCAcGCUGGccgaaggcacGACGGCg -3' miRNA: 3'- uACGUGaCGCAGUuUGACCa---------CUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 197688 | 0.72 | 0.857315 |
Target: 5'- -cGCGCUGCGcagggCAGACUGcGUcACGGCa -3' miRNA: 3'- uaCGUGACGCa----GUUUGAC-CAcUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 65704 | 0.71 | 0.900389 |
Target: 5'- gGUGCuGCUGCG-CGAcAC-GGUGGCGGCg -3' miRNA: 3'- -UACG-UGACGCaGUU-UGaCCACUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 174348 | 0.69 | 0.944471 |
Target: 5'- -cGCGCUGgcUGUCGAGCUGGUuaACGAg -3' miRNA: 3'- uaCGUGAC--GCAGUUUGACCAc-UGCUg -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 158340 | 0.69 | 0.956607 |
Target: 5'- cGUGCACUGCucgcucugcggcaGUCAGcgGgUGGUG-CGGCa -3' miRNA: 3'- -UACGUGACG-------------CAGUU--UgACCACuGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 192648 | 0.69 | 0.953054 |
Target: 5'- -aGaCGCUGCGUCGGuuuCUGcGcGGCGACa -3' miRNA: 3'- uaC-GUGACGCAGUUu--GAC-CaCUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 142438 | 0.69 | 0.95699 |
Target: 5'- -gGCGCgGCGUCcGGCgucgggGGUGGCGGu -3' miRNA: 3'- uaCGUGaCGCAGuUUGa-----CCACUGCUg -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 15604 | 0.69 | 0.944471 |
Target: 5'- cUGCAUUGC------CUGGUGACGACg -3' miRNA: 3'- uACGUGACGcaguuuGACCACUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 110859 | 0.68 | 0.970473 |
Target: 5'- -cGCAUcGCGcCGAGgUGGUGgcGCGACa -3' miRNA: 3'- uaCGUGaCGCaGUUUgACCAC--UGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 171707 | 0.68 | 0.973305 |
Target: 5'- -cGUGCUGCG-CGAGUUGGUGACcgaGGCg -3' miRNA: 3'- uaCGUGACGCaGUUUGACCACUG---CUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 144672 | 0.67 | 0.988496 |
Target: 5'- gGUGCgcaACUGCGaCGAACacgaggcucucgacuUGGUGACGcGCg -3' miRNA: 3'- -UACG---UGACGCaGUUUG---------------ACCACUGC-UG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 195320 | 0.67 | 0.987904 |
Target: 5'- -gGCACggggGCGUCGugaaggaggaGACU-GUGAUGACu -3' miRNA: 3'- uaCGUGa---CGCAGU----------UUGAcCACUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 104449 | 0.67 | 0.980185 |
Target: 5'- gGUGCACggacaaaaggccGCGUgCGAACUaauccuuacgccGGUGACGAUg -3' miRNA: 3'- -UACGUGa-----------CGCA-GUUUGA------------CCACUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 163953 | 0.67 | 0.98062 |
Target: 5'- uGUGCACgcGCGUCAgcAGCUGcGUGcucaGACg -3' miRNA: 3'- -UACGUGa-CGCAGU--UUGAC-CACug--CUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 129743 | 0.67 | 0.98062 |
Target: 5'- ---uGCUGCG-CAAGCUGGUgGugGAa -3' miRNA: 3'- uacgUGACGCaGUUUGACCA-CugCUg -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 203015 | 0.67 | 0.982689 |
Target: 5'- -gGCugUGUgccGUUAAAUaccuugGGUGACGACa -3' miRNA: 3'- uaCGugACG---CAGUUUGa-----CCACUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 117865 | 0.67 | 0.986323 |
Target: 5'- -gGCgACcGCGUCAGAC-GG-GGCGACc -3' miRNA: 3'- uaCG-UGaCGCAGUUUGaCCaCUGCUG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 182215 | 0.66 | 0.991812 |
Target: 5'- -cGgGCUGCGUCGccuucGGUGACGuCg -3' miRNA: 3'- uaCgUGACGCAGUuuga-CCACUGCuG- -5' |
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1586 | 3' | -52.2 | NC_001347.2 | + | 170622 | 0.66 | 0.990264 |
Target: 5'- uUGUGCUGCGUCAcauGgaggaucuacccaaGCUGGcgaggaGACGGCg -3' miRNA: 3'- uACGUGACGCAGU---U--------------UGACCa-----CUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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