miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1586 5' -62 NC_001347.2 + 154881 0.66 0.746955
Target:  5'- cGGCCAguucUGCAUCUa-GGUCGCAGGcGg -3'
miRNA:   3'- aCCGGU----GCGUGGAcaCCGGCGUCCuC- -5'
1586 5' -62 NC_001347.2 + 173978 0.66 0.737777
Target:  5'- gGGCCGCGUGCCUGggaacGCgCGCAcGGc- -3'
miRNA:   3'- aCCGGUGCGUGGACac---CG-GCGU-CCuc -5'
1586 5' -62 NC_001347.2 + 2239 0.66 0.728517
Target:  5'- cGuGCCGCGCGCCaugcugGUGGUgcUGCuGGAc -3'
miRNA:   3'- aC-CGGUGCGUGGa-----CACCG--GCGuCCUc -5'
1586 5' -62 NC_001347.2 + 38971 0.66 0.719183
Target:  5'- cGGCCuuguCGCccACCgucggGUcGGCUGCGGGGu -3'
miRNA:   3'- aCCGGu---GCG--UGGa----CA-CCGGCGUCCUc -5'
1586 5' -62 NC_001347.2 + 185238 0.66 0.719183
Target:  5'- -uGUCACGCAUCUcgGcGGCuCGCAGGAc -3'
miRNA:   3'- acCGGUGCGUGGA--CaCCG-GCGUCCUc -5'
1586 5' -62 NC_001347.2 + 31398 0.66 0.700324
Target:  5'- gUGGCUGCGCcuccucgucgGCCUG-GGCUGCuguuGGGu -3'
miRNA:   3'- -ACCGGUGCG----------UGGACaCCGGCGu---CCUc -5'
1586 5' -62 NC_001347.2 + 2025 0.66 0.700324
Target:  5'- aGGCCgccggcggggACGCGCC-GUGcGCgauaGCGGGAGc -3'
miRNA:   3'- aCCGG----------UGCGUGGaCAC-CGg---CGUCCUC- -5'
1586 5' -62 NC_001347.2 + 183460 0.66 0.700324
Target:  5'- aGGCgcggauaGCGCGCCUc-GGCCuCGGGAGa -3'
miRNA:   3'- aCCGg------UGCGUGGAcaCCGGcGUCCUC- -5'
1586 5' -62 NC_001347.2 + 196140 0.67 0.68126
Target:  5'- cGGCCGCugccugccggcgGC-CCUGU-GCCGCGGGu- -3'
miRNA:   3'- aCCGGUG------------CGuGGACAcCGGCGUCCuc -5'
1586 5' -62 NC_001347.2 + 86234 0.67 0.68126
Target:  5'- cGGCCACGCGCUccagGGCCuCGGcGAu -3'
miRNA:   3'- aCCGGUGCGUGGaca-CCGGcGUC-CUc -5'
1586 5' -62 NC_001347.2 + 11822 0.67 0.67167
Target:  5'- -cGCUACGCGUCUGgGGCCGUuguucGGAGg -3'
miRNA:   3'- acCGGUGCGUGGACaCCGGCGu----CCUC- -5'
1586 5' -62 NC_001347.2 + 39714 0.67 0.67167
Target:  5'- gGcGCCACGCAgUCUGgaaGGCCGUggacuGGGAa -3'
miRNA:   3'- aC-CGGUGCGU-GGACa--CCGGCG-----UCCUc -5'
1586 5' -62 NC_001347.2 + 185453 0.67 0.67167
Target:  5'- cGuGCCGagacagaaguUGCGCCggacggcguUGUGGCgCGCAGGGGc -3'
miRNA:   3'- aC-CGGU----------GCGUGG---------ACACCG-GCGUCCUC- -5'
1586 5' -62 NC_001347.2 + 29234 0.67 0.652411
Target:  5'- gGGCUACGCGgauCgaGUGccgacGCCGguGGAGg -3'
miRNA:   3'- aCCGGUGCGU---GgaCAC-----CGGCguCCUC- -5'
1586 5' -62 NC_001347.2 + 168824 0.67 0.642757
Target:  5'- cGGCCGCGCgACCc--GGCCGacgAGGAc -3'
miRNA:   3'- aCCGGUGCG-UGGacaCCGGCg--UCCUc -5'
1586 5' -62 NC_001347.2 + 22207 0.68 0.633095
Target:  5'- -aGCCACGCGCUgGUGGCCGaaCAGcAGc -3'
miRNA:   3'- acCGGUGCGUGGaCACCGGC--GUCcUC- -5'
1586 5' -62 NC_001347.2 + 138192 0.68 0.613776
Target:  5'- aGGUUugGCGCCcGUaGGCgCGCGGGu- -3'
miRNA:   3'- aCCGGugCGUGGaCA-CCG-GCGUCCuc -5'
1586 5' -62 NC_001347.2 + 200349 0.68 0.604131
Target:  5'- cUGGCCGCcggGCuggaACCUaGU-GCUGCAGGAGa -3'
miRNA:   3'- -ACCGGUG---CG----UGGA-CAcCGGCGUCCUC- -5'
1586 5' -62 NC_001347.2 + 182216 0.68 0.598353
Target:  5'- gGGCUGCGuCGCCUucggugacgucggugGUGGCUGUAGGc- -3'
miRNA:   3'- aCCGGUGC-GUGGA---------------CACCGGCGUCCuc -5'
1586 5' -62 NC_001347.2 + 209064 0.68 0.594506
Target:  5'- cGGUCGCGCACC---GGCUGCAGa-- -3'
miRNA:   3'- aCCGGUGCGUGGacaCCGGCGUCcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.