Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1586 | 5' | -62 | NC_001347.2 | + | 181542 | 1.07 | 0.001649 |
Target: 5'- cUGGCCACGCACCUGUGGCCGCAGGAGc -3' miRNA: 3'- -ACCGGUGCGUGGACACCGGCGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 185356 | 0.74 | 0.289316 |
Target: 5'- aGGCCGC-CGCCgUGggGGCCGCggaGGGAGg -3' miRNA: 3'- aCCGGUGcGUGG-ACa-CCGGCG---UCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 152379 | 0.72 | 0.397374 |
Target: 5'- gGGCUGCGuCGCCUGcgacGGCgGguGGAGa -3' miRNA: 3'- aCCGGUGC-GUGGACa---CCGgCguCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 71646 | 0.71 | 0.413614 |
Target: 5'- -cGCUACGCAUCcGUGGCCGCGGc-- -3' miRNA: 3'- acCGGUGCGUGGaCACCGGCGUCcuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 1189 | 0.71 | 0.45594 |
Target: 5'- aGGCCAUggGCGCCgUGUGGCgCGCGGc-- -3' miRNA: 3'- aCCGGUG--CGUGG-ACACCG-GCGUCcuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 112967 | 0.7 | 0.518846 |
Target: 5'- cGGCgACGCACCUGccacGGuaGCAccuGGAGg -3' miRNA: 3'- aCCGgUGCGUGGACa---CCggCGU---CCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 177625 | 0.7 | 0.473512 |
Target: 5'- gUGGCCGCGC-UCU-UGGCCGagccgGGGAGg -3' miRNA: 3'- -ACCGGUGCGuGGAcACCGGCg----UCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 184754 | 0.69 | 0.575334 |
Target: 5'- cGGUgGCGCuCgUGUGGCaGCAGGGc -3' miRNA: 3'- aCCGgUGCGuGgACACCGgCGUCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 168549 | 0.69 | 0.550631 |
Target: 5'- gGGUCGCGCGCCgucuguaccguggcGUGGCU-UAGGAGg -3' miRNA: 3'- aCCGGUGCGUGGa-------------CACCGGcGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 14301 | 0.69 | 0.528125 |
Target: 5'- cGGagcuccCCGCGCuGCCUGUGGCgGCcgAGGAu -3' miRNA: 3'- aCC------GGUGCG-UGGACACCGgCG--UCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 1239 | 0.69 | 0.556306 |
Target: 5'- cGcGCCAUGCGCaaGUGGUCGCAGc-- -3' miRNA: 3'- aC-CGGUGCGUGgaCACCGGCGUCcuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 150165 | 0.69 | 0.565799 |
Target: 5'- gGGCCGCGC-CCagGUaGGCCguuacugucuGCAGGAc -3' miRNA: 3'- aCCGGUGCGuGGa-CA-CCGG----------CGUCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 200349 | 0.68 | 0.604131 |
Target: 5'- cUGGCCGCcggGCuggaACCUaGU-GCUGCAGGAGa -3' miRNA: 3'- -ACCGGUG---CG----UGGA-CAcCGGCGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 182216 | 0.68 | 0.598353 |
Target: 5'- gGGCUGCGuCGCCUucggugacgucggugGUGGCUGUAGGc- -3' miRNA: 3'- aCCGGUGC-GUGGA---------------CACCGGCGUCCuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 209064 | 0.68 | 0.594506 |
Target: 5'- cGGUCGCGCACC---GGCUGCAGa-- -3' miRNA: 3'- aCCGGUGCGUGGacaCCGGCGUCcuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 138192 | 0.68 | 0.613776 |
Target: 5'- aGGUUugGCGCCcGUaGGCgCGCGGGu- -3' miRNA: 3'- aCCGGugCGUGGaCA-CCG-GCGUCCuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 22207 | 0.68 | 0.633095 |
Target: 5'- -aGCCACGCGCUgGUGGCCGaaCAGcAGc -3' miRNA: 3'- acCGGUGCGUGGaCACCGGC--GUCcUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 23353 | 0.68 | 0.594506 |
Target: 5'- gGGuCUACaGCACC-GUGGCCguGCAGGGc -3' miRNA: 3'- aCC-GGUG-CGUGGaCACCGG--CGUCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 168824 | 0.67 | 0.642757 |
Target: 5'- cGGCCGCGCgACCc--GGCCGacgAGGAc -3' miRNA: 3'- aCCGGUGCG-UGGacaCCGGCg--UCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 11822 | 0.67 | 0.67167 |
Target: 5'- -cGCUACGCGUCUGgGGCCGUuguucGGAGg -3' miRNA: 3'- acCGGUGCGUGGACaCCGGCGu----CCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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