miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1586 5' -62 NC_001347.2 + 23353 0.68 0.594506
Target:  5'- gGGuCUACaGCACC-GUGGCCguGCAGGGc -3'
miRNA:   3'- aCC-GGUG-CGUGGaCACCGG--CGUCCUc -5'
1586 5' -62 NC_001347.2 + 184754 0.69 0.575334
Target:  5'- cGGUgGCGCuCgUGUGGCaGCAGGGc -3'
miRNA:   3'- aCCGgUGCGuGgACACCGgCGUCCUc -5'
1586 5' -62 NC_001347.2 + 150165 0.69 0.565799
Target:  5'- gGGCCGCGC-CCagGUaGGCCguuacugucuGCAGGAc -3'
miRNA:   3'- aCCGGUGCGuGGa-CA-CCGG----------CGUCCUc -5'
1586 5' -62 NC_001347.2 + 1239 0.69 0.556306
Target:  5'- cGcGCCAUGCGCaaGUGGUCGCAGc-- -3'
miRNA:   3'- aC-CGGUGCGUGgaCACCGGCGUCcuc -5'
1586 5' -62 NC_001347.2 + 168549 0.69 0.550631
Target:  5'- gGGUCGCGCGCCgucuguaccguggcGUGGCU-UAGGAGg -3'
miRNA:   3'- aCCGGUGCGUGGa-------------CACCGGcGUCCUC- -5'
1586 5' -62 NC_001347.2 + 14301 0.69 0.528125
Target:  5'- cGGagcuccCCGCGCuGCCUGUGGCgGCcgAGGAu -3'
miRNA:   3'- aCC------GGUGCG-UGGACACCGgCG--UCCUc -5'
1586 5' -62 NC_001347.2 + 112967 0.7 0.518846
Target:  5'- cGGCgACGCACCUGccacGGuaGCAccuGGAGg -3'
miRNA:   3'- aCCGgUGCGUGGACa---CCggCGU---CCUC- -5'
1586 5' -62 NC_001347.2 + 177625 0.7 0.473512
Target:  5'- gUGGCCGCGC-UCU-UGGCCGagccgGGGAGg -3'
miRNA:   3'- -ACCGGUGCGuGGAcACCGGCg----UCCUC- -5'
1586 5' -62 NC_001347.2 + 1189 0.71 0.45594
Target:  5'- aGGCCAUggGCGCCgUGUGGCgCGCGGc-- -3'
miRNA:   3'- aCCGGUG--CGUGG-ACACCG-GCGUCcuc -5'
1586 5' -62 NC_001347.2 + 71646 0.71 0.413614
Target:  5'- -cGCUACGCAUCcGUGGCCGCGGc-- -3'
miRNA:   3'- acCGGUGCGUGGaCACCGGCGUCcuc -5'
1586 5' -62 NC_001347.2 + 152379 0.72 0.397374
Target:  5'- gGGCUGCGuCGCCUGcgacGGCgGguGGAGa -3'
miRNA:   3'- aCCGGUGC-GUGGACa---CCGgCguCCUC- -5'
1586 5' -62 NC_001347.2 + 185356 0.74 0.289316
Target:  5'- aGGCCGC-CGCCgUGggGGCCGCggaGGGAGg -3'
miRNA:   3'- aCCGGUGcGUGG-ACa-CCGGCG---UCCUC- -5'
1586 5' -62 NC_001347.2 + 181542 1.07 0.001649
Target:  5'- cUGGCCACGCACCUGUGGCCGCAGGAGc -3'
miRNA:   3'- -ACCGGUGCGUGGACACCGGCGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.