miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1586 5' -62 NC_001347.2 + 1189 0.71 0.45594
Target:  5'- aGGCCAUggGCGCCgUGUGGCgCGCGGc-- -3'
miRNA:   3'- aCCGGUG--CGUGG-ACACCG-GCGUCcuc -5'
1586 5' -62 NC_001347.2 + 1239 0.69 0.556306
Target:  5'- cGcGCCAUGCGCaaGUGGUCGCAGc-- -3'
miRNA:   3'- aC-CGGUGCGUGgaCACCGGCGUCcuc -5'
1586 5' -62 NC_001347.2 + 2025 0.66 0.700324
Target:  5'- aGGCCgccggcggggACGCGCC-GUGcGCgauaGCGGGAGc -3'
miRNA:   3'- aCCGG----------UGCGUGGaCAC-CGg---CGUCCUC- -5'
1586 5' -62 NC_001347.2 + 2239 0.66 0.728517
Target:  5'- cGuGCCGCGCGCCaugcugGUGGUgcUGCuGGAc -3'
miRNA:   3'- aC-CGGUGCGUGGa-----CACCG--GCGuCCUc -5'
1586 5' -62 NC_001347.2 + 11822 0.67 0.67167
Target:  5'- -cGCUACGCGUCUGgGGCCGUuguucGGAGg -3'
miRNA:   3'- acCGGUGCGUGGACaCCGGCGu----CCUC- -5'
1586 5' -62 NC_001347.2 + 14301 0.69 0.528125
Target:  5'- cGGagcuccCCGCGCuGCCUGUGGCgGCcgAGGAu -3'
miRNA:   3'- aCC------GGUGCG-UGGACACCGgCG--UCCUc -5'
1586 5' -62 NC_001347.2 + 22207 0.68 0.633095
Target:  5'- -aGCCACGCGCUgGUGGCCGaaCAGcAGc -3'
miRNA:   3'- acCGGUGCGUGGaCACCGGC--GUCcUC- -5'
1586 5' -62 NC_001347.2 + 23353 0.68 0.594506
Target:  5'- gGGuCUACaGCACC-GUGGCCguGCAGGGc -3'
miRNA:   3'- aCC-GGUG-CGUGGaCACCGG--CGUCCUc -5'
1586 5' -62 NC_001347.2 + 29234 0.67 0.652411
Target:  5'- gGGCUACGCGgauCgaGUGccgacGCCGguGGAGg -3'
miRNA:   3'- aCCGGUGCGU---GgaCAC-----CGGCguCCUC- -5'
1586 5' -62 NC_001347.2 + 31398 0.66 0.700324
Target:  5'- gUGGCUGCGCcuccucgucgGCCUG-GGCUGCuguuGGGu -3'
miRNA:   3'- -ACCGGUGCG----------UGGACaCCGGCGu---CCUc -5'
1586 5' -62 NC_001347.2 + 38971 0.66 0.719183
Target:  5'- cGGCCuuguCGCccACCgucggGUcGGCUGCGGGGu -3'
miRNA:   3'- aCCGGu---GCG--UGGa----CA-CCGGCGUCCUc -5'
1586 5' -62 NC_001347.2 + 39714 0.67 0.67167
Target:  5'- gGcGCCACGCAgUCUGgaaGGCCGUggacuGGGAa -3'
miRNA:   3'- aC-CGGUGCGU-GGACa--CCGGCG-----UCCUc -5'
1586 5' -62 NC_001347.2 + 71646 0.71 0.413614
Target:  5'- -cGCUACGCAUCcGUGGCCGCGGc-- -3'
miRNA:   3'- acCGGUGCGUGGaCACCGGCGUCcuc -5'
1586 5' -62 NC_001347.2 + 86234 0.67 0.68126
Target:  5'- cGGCCACGCGCUccagGGCCuCGGcGAu -3'
miRNA:   3'- aCCGGUGCGUGGaca-CCGGcGUC-CUc -5'
1586 5' -62 NC_001347.2 + 112967 0.7 0.518846
Target:  5'- cGGCgACGCACCUGccacGGuaGCAccuGGAGg -3'
miRNA:   3'- aCCGgUGCGUGGACa---CCggCGU---CCUC- -5'
1586 5' -62 NC_001347.2 + 138192 0.68 0.613776
Target:  5'- aGGUUugGCGCCcGUaGGCgCGCGGGu- -3'
miRNA:   3'- aCCGGugCGUGGaCA-CCG-GCGUCCuc -5'
1586 5' -62 NC_001347.2 + 150165 0.69 0.565799
Target:  5'- gGGCCGCGC-CCagGUaGGCCguuacugucuGCAGGAc -3'
miRNA:   3'- aCCGGUGCGuGGa-CA-CCGG----------CGUCCUc -5'
1586 5' -62 NC_001347.2 + 152379 0.72 0.397374
Target:  5'- gGGCUGCGuCGCCUGcgacGGCgGguGGAGa -3'
miRNA:   3'- aCCGGUGC-GUGGACa---CCGgCguCCUC- -5'
1586 5' -62 NC_001347.2 + 154881 0.66 0.746955
Target:  5'- cGGCCAguucUGCAUCUa-GGUCGCAGGcGg -3'
miRNA:   3'- aCCGGU----GCGUGGAcaCCGGCGUCCuC- -5'
1586 5' -62 NC_001347.2 + 168549 0.69 0.550631
Target:  5'- gGGUCGCGCGCCgucuguaccguggcGUGGCU-UAGGAGg -3'
miRNA:   3'- aCCGGUGCGUGGa-------------CACCGGcGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.