Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1586 | 5' | -62 | NC_001347.2 | + | 181542 | 1.07 | 0.001649 |
Target: 5'- cUGGCCACGCACCUGUGGCCGCAGGAGc -3' miRNA: 3'- -ACCGGUGCGUGGACACCGGCGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 29234 | 0.67 | 0.652411 |
Target: 5'- gGGCUACGCGgauCgaGUGccgacGCCGguGGAGg -3' miRNA: 3'- aCCGGUGCGU---GgaCAC-----CGGCguCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 11822 | 0.67 | 0.67167 |
Target: 5'- -cGCUACGCGUCUGgGGCCGUuguucGGAGg -3' miRNA: 3'- acCGGUGCGUGGACaCCGGCGu----CCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 168824 | 0.67 | 0.642757 |
Target: 5'- cGGCCGCGCgACCc--GGCCGacgAGGAc -3' miRNA: 3'- aCCGGUGCG-UGGacaCCGGCg--UCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 22207 | 0.68 | 0.633095 |
Target: 5'- -aGCCACGCGCUgGUGGCCGaaCAGcAGc -3' miRNA: 3'- acCGGUGCGUGGaCACCGGC--GUCcUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 138192 | 0.68 | 0.613776 |
Target: 5'- aGGUUugGCGCCcGUaGGCgCGCGGGu- -3' miRNA: 3'- aCCGGugCGUGGaCA-CCG-GCGUCCuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 209064 | 0.68 | 0.594506 |
Target: 5'- cGGUCGCGCACC---GGCUGCAGa-- -3' miRNA: 3'- aCCGGUGCGUGGacaCCGGCGUCcuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 182216 | 0.68 | 0.598353 |
Target: 5'- gGGCUGCGuCGCCUucggugacgucggugGUGGCUGUAGGc- -3' miRNA: 3'- aCCGGUGC-GUGGA---------------CACCGGCGUCCuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 200349 | 0.68 | 0.604131 |
Target: 5'- cUGGCCGCcggGCuggaACCUaGU-GCUGCAGGAGa -3' miRNA: 3'- -ACCGGUG---CG----UGGA-CAcCGGCGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 39714 | 0.67 | 0.67167 |
Target: 5'- gGcGCCACGCAgUCUGgaaGGCCGUggacuGGGAa -3' miRNA: 3'- aC-CGGUGCGU-GGACa--CCGGCG-----UCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 185453 | 0.67 | 0.67167 |
Target: 5'- cGuGCCGagacagaaguUGCGCCggacggcguUGUGGCgCGCAGGGGc -3' miRNA: 3'- aC-CGGU----------GCGUGG---------ACACCG-GCGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 86234 | 0.67 | 0.68126 |
Target: 5'- cGGCCACGCGCUccagGGCCuCGGcGAu -3' miRNA: 3'- aCCGGUGCGUGGaca-CCGGcGUC-CUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 173978 | 0.66 | 0.737777 |
Target: 5'- gGGCCGCGUGCCUGggaacGCgCGCAcGGc- -3' miRNA: 3'- aCCGGUGCGUGGACac---CG-GCGU-CCuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 2239 | 0.66 | 0.728517 |
Target: 5'- cGuGCCGCGCGCCaugcugGUGGUgcUGCuGGAc -3' miRNA: 3'- aC-CGGUGCGUGGa-----CACCG--GCGuCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 38971 | 0.66 | 0.719183 |
Target: 5'- cGGCCuuguCGCccACCgucggGUcGGCUGCGGGGu -3' miRNA: 3'- aCCGGu---GCG--UGGa----CA-CCGGCGUCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 185238 | 0.66 | 0.719183 |
Target: 5'- -uGUCACGCAUCUcgGcGGCuCGCAGGAc -3' miRNA: 3'- acCGGUGCGUGGA--CaCCG-GCGUCCUc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 183460 | 0.66 | 0.700324 |
Target: 5'- aGGCgcggauaGCGCGCCUc-GGCCuCGGGAGa -3' miRNA: 3'- aCCGg------UGCGUGGAcaCCGGcGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 196140 | 0.67 | 0.68126 |
Target: 5'- cGGCCGCugccugccggcgGC-CCUGU-GCCGCGGGu- -3' miRNA: 3'- aCCGGUG------------CGuGGACAcCGGCGUCCuc -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 2025 | 0.66 | 0.700324 |
Target: 5'- aGGCCgccggcggggACGCGCC-GUGcGCgauaGCGGGAGc -3' miRNA: 3'- aCCGG----------UGCGUGGaCAC-CGg---CGUCCUC- -5' |
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1586 | 5' | -62 | NC_001347.2 | + | 31398 | 0.66 | 0.700324 |
Target: 5'- gUGGCUGCGCcuccucgucgGCCUG-GGCUGCuguuGGGu -3' miRNA: 3'- -ACCGGUGCG----------UGGACaCCGGCGu---CCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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