miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 67983 0.66 0.926656
Target:  5'- cGCAgGAauggaCCAUGUacUGCGGGGAGGa -3'
miRNA:   3'- -UGUgCUagg--GGUACG--ACGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 62107 0.66 0.926656
Target:  5'- -gGCGGUCgUUAcGCUcGCG-GGAGGCg -3'
miRNA:   3'- ugUGCUAGgGGUaCGA-CGCuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 71025 0.66 0.926656
Target:  5'- aGCugGAggCCaagagaGUGgucgGCGGGGAGGCa -3'
miRNA:   3'- -UGugCUagGGg-----UACga--CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 130172 0.66 0.926656
Target:  5'- cCGCGA-CCCCGgcgccaucUGgUGCGAcGGGGCc -3'
miRNA:   3'- uGUGCUaGGGGU--------ACgACGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 107420 0.66 0.926656
Target:  5'- gACugGGaCCUCGUGCUGCccuGGAucgugcccauGGCg -3'
miRNA:   3'- -UGugCUaGGGGUACGACGcu-CCU----------CCG- -5'
15862 5' -57.5 NC_004065.1 + 200365 0.66 0.926656
Target:  5'- -gGCG-UCCUCuucGCcgGCGAGGAGGg -3'
miRNA:   3'- ugUGCuAGGGGua-CGa-CGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 139837 0.66 0.921395
Target:  5'- cCugGAgUCCCGggagGCggGCGAcggcGGAGGCg -3'
miRNA:   3'- uGugCUaGGGGUa---CGa-CGCU----CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 105373 0.66 0.920315
Target:  5'- -gGCGGa-CCCGgacucgcugacgGCcgGCGAGGAGGCg -3'
miRNA:   3'- ugUGCUagGGGUa-----------CGa-CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 111404 0.66 0.919773
Target:  5'- uGCGCGAccgggccggauuccUCCCCGU-CUGUGAGaugcaGGGCc -3'
miRNA:   3'- -UGUGCU--------------AGGGGUAcGACGCUCc----UCCG- -5'
15862 5' -57.5 NC_004065.1 + 35475 0.66 0.919773
Target:  5'- uGCGCGGUgCCCGUgacgacguucacggGCacgaccgGCGucuuGGAGGCg -3'
miRNA:   3'- -UGUGCUAgGGGUA--------------CGa------CGCu---CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 107327 0.66 0.91591
Target:  5'- aACACGggUCCCGUgaGCUGgGAGaAGGg -3'
miRNA:   3'- -UGUGCuaGGGGUA--CGACgCUCcUCCg -5'
15862 5' -57.5 NC_004065.1 + 108353 0.66 0.910203
Target:  5'- gGCACGAgCUCCuUGUUcGCGGGGAGu- -3'
miRNA:   3'- -UGUGCUaGGGGuACGA-CGCUCCUCcg -5'
15862 5' -57.5 NC_004065.1 + 119660 0.66 0.910203
Target:  5'- uGCGCGAgaggUCCCAgccGCUGCGGu--GGCu -3'
miRNA:   3'- -UGUGCUa---GGGGUa--CGACGCUccuCCG- -5'
15862 5' -57.5 NC_004065.1 + 119424 0.66 0.904276
Target:  5'- -gACGGucuucaUCCCCGUGC-GCGuGGuGGUc -3'
miRNA:   3'- ugUGCU------AGGGGUACGaCGCuCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 70072 0.66 0.898131
Target:  5'- cCGCGAUCCUCAaagGC-GCGGaccccGAGGCg -3'
miRNA:   3'- uGUGCUAGGGGUa--CGaCGCUc----CUCCG- -5'
15862 5' -57.5 NC_004065.1 + 146327 0.66 0.898131
Target:  5'- uGCGCGA-UgCCAUGCaGCGccucuucaAGGAGGUc -3'
miRNA:   3'- -UGUGCUaGgGGUACGaCGC--------UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 989 0.66 0.898131
Target:  5'- -aACuuUCCCUugagcGCUGCG-GGAGGCc -3'
miRNA:   3'- ugUGcuAGGGGua---CGACGCuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 193379 0.66 0.898131
Target:  5'- uGCGCGAUCgCCGacGUUGaucuGGGGGGCg -3'
miRNA:   3'- -UGUGCUAGgGGUa-CGACgc--UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 29918 0.67 0.89177
Target:  5'- cGCGCGAagUCCUCggGCUcgauauccGCuGAGGAGGa -3'
miRNA:   3'- -UGUGCU--AGGGGuaCGA--------CG-CUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 121396 0.67 0.89177
Target:  5'- aACACGAUCagcaCCA-GCUGCccgccGGAcGGCg -3'
miRNA:   3'- -UGUGCUAGg---GGUaCGACGcu---CCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.