Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 108353 | 0.66 | 0.910203 |
Target: 5'- gGCACGAgCUCCuUGUUcGCGGGGAGu- -3' miRNA: 3'- -UGUGCUaGGGGuACGA-CGCUCCUCcg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 62107 | 0.66 | 0.926656 |
Target: 5'- -gGCGGUCgUUAcGCUcGCG-GGAGGCg -3' miRNA: 3'- ugUGCUAGgGGUaCGA-CGCuCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 71025 | 0.66 | 0.926656 |
Target: 5'- aGCugGAggCCaagagaGUGgucgGCGGGGAGGCa -3' miRNA: 3'- -UGugCUagGGg-----UACga--CGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 989 | 0.66 | 0.898131 |
Target: 5'- -aACuuUCCCUugagcGCUGCG-GGAGGCc -3' miRNA: 3'- ugUGcuAGGGGua---CGACGCuCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 193379 | 0.66 | 0.898131 |
Target: 5'- uGCGCGAUCgCCGacGUUGaucuGGGGGGCg -3' miRNA: 3'- -UGUGCUAGgGGUa-CGACgc--UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 107327 | 0.66 | 0.91591 |
Target: 5'- aACACGggUCCCGUgaGCUGgGAGaAGGg -3' miRNA: 3'- -UGUGCuaGGGGUA--CGACgCUCcUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 105373 | 0.66 | 0.920315 |
Target: 5'- -gGCGGa-CCCGgacucgcugacgGCcgGCGAGGAGGCg -3' miRNA: 3'- ugUGCUagGGGUa-----------CGa-CGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 107420 | 0.66 | 0.926656 |
Target: 5'- gACugGGaCCUCGUGCUGCccuGGAucgugcccauGGCg -3' miRNA: 3'- -UGugCUaGGGGUACGACGcu-CCU----------CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 200365 | 0.66 | 0.926656 |
Target: 5'- -gGCG-UCCUCuucGCcgGCGAGGAGGg -3' miRNA: 3'- ugUGCuAGGGGua-CGa-CGCUCCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 130172 | 0.66 | 0.926656 |
Target: 5'- cCGCGA-CCCCGgcgccaucUGgUGCGAcGGGGCc -3' miRNA: 3'- uGUGCUaGGGGU--------ACgACGCUcCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 67983 | 0.66 | 0.926656 |
Target: 5'- cGCAgGAauggaCCAUGUacUGCGGGGAGGa -3' miRNA: 3'- -UGUgCUagg--GGUACG--ACGCUCCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 35475 | 0.66 | 0.919773 |
Target: 5'- uGCGCGGUgCCCGUgacgacguucacggGCacgaccgGCGucuuGGAGGCg -3' miRNA: 3'- -UGUGCUAgGGGUA--------------CGa------CGCu---CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 139837 | 0.66 | 0.921395 |
Target: 5'- cCugGAgUCCCGggagGCggGCGAcggcGGAGGCg -3' miRNA: 3'- uGugCUaGGGGUa---CGa-CGCU----CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 146327 | 0.66 | 0.898131 |
Target: 5'- uGCGCGA-UgCCAUGCaGCGccucuucaAGGAGGUc -3' miRNA: 3'- -UGUGCUaGgGGUACGaCGC--------UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 70072 | 0.66 | 0.898131 |
Target: 5'- cCGCGAUCCUCAaagGC-GCGGaccccGAGGCg -3' miRNA: 3'- uGUGCUAGGGGUa--CGaCGCUc----CUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 119424 | 0.66 | 0.904276 |
Target: 5'- -gACGGucuucaUCCCCGUGC-GCGuGGuGGUc -3' miRNA: 3'- ugUGCU------AGGGGUACGaCGCuCCuCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 119660 | 0.66 | 0.910203 |
Target: 5'- uGCGCGAgaggUCCCAgccGCUGCGGu--GGCu -3' miRNA: 3'- -UGUGCUa---GGGGUa--CGACGCUccuCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 111404 | 0.66 | 0.919773 |
Target: 5'- uGCGCGAccgggccggauuccUCCCCGU-CUGUGAGaugcaGGGCc -3' miRNA: 3'- -UGUGCU--------------AGGGGUAcGACGCUCc----UCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 121396 | 0.67 | 0.89177 |
Target: 5'- aACACGAUCagcaCCA-GCUGCccgccGGAcGGCg -3' miRNA: 3'- -UGUGCUAGg---GGUaCGACGcu---CCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 66741 | 0.67 | 0.878413 |
Target: 5'- aGCucuuCGAUCCguaCcgGaaucGCGAGGAGGCg -3' miRNA: 3'- -UGu---GCUAGGg--GuaCga--CGCUCCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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