Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 75748 | 0.69 | 0.800212 |
Target: 5'- cGCAgGcugCCCCAgcGCUGacccgGGGGAGGCg -3' miRNA: 3'- -UGUgCua-GGGGUa-CGACg----CUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 50741 | 0.69 | 0.791494 |
Target: 5'- uGCACGGcggCUCCGUGUggucGCGuGGAGGa -3' miRNA: 3'- -UGUGCUa--GGGGUACGa---CGCuCCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 215812 | 0.69 | 0.764569 |
Target: 5'- gGCACGcgUUUCGUGCgauauUGUGAcGGAGGCg -3' miRNA: 3'- -UGUGCuaGGGGUACG-----ACGCU-CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 41731 | 0.68 | 0.816379 |
Target: 5'- gUACG--CCCCGUGCUgggaaguuacaacGCGAGGGuGGCc -3' miRNA: 3'- uGUGCuaGGGGUACGA-------------CGCUCCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 105092 | 0.68 | 0.833589 |
Target: 5'- aACGCGAaCCUgGUGC-GCGuGGuGGCc -3' miRNA: 3'- -UGUGCUaGGGgUACGaCGCuCCuCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 158704 | 0.68 | 0.825484 |
Target: 5'- cCGCGAUgCCCAacaGgaGCGAGGAGa- -3' miRNA: 3'- uGUGCUAgGGGUa--CgaCGCUCCUCcg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 158338 | 0.68 | 0.824664 |
Target: 5'- gACGCGccgCuCCCGuugccgccgccgcUGCUGCugcuGAGGAGGCc -3' miRNA: 3'- -UGUGCua-G-GGGU-------------ACGACG----CUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 182405 | 0.68 | 0.841524 |
Target: 5'- -aACGAUCCaCCGUGUcgGCGAuguaucgagaGGAGGa -3' miRNA: 3'- ugUGCUAGG-GGUACGa-CGCU----------CCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 126521 | 0.68 | 0.852332 |
Target: 5'- cGCGCGAUCguCCCGUGCUccaucaGCGuAcgcaacacgaagcacGGGGGCg -3' miRNA: 3'- -UGUGCUAG--GGGUACGA------CGC-U---------------CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 143493 | 0.68 | 0.856853 |
Target: 5'- uCugGAUCCCCAcuucgcccgggaUGCUGUGAGcAGcGUc -3' miRNA: 3'- uGugCUAGGGGU------------ACGACGCUCcUC-CG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 116471 | 0.68 | 0.856853 |
Target: 5'- -gACGAUCCCCAgaaagGCggGCGAGcuGAgccGGCc -3' miRNA: 3'- ugUGCUAGGGGUa----CGa-CGCUC--CU---CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 4345 | 0.68 | 0.849281 |
Target: 5'- -aACGGUcgaCCCCAaacgGCUGCGcguGGAGcGCg -3' miRNA: 3'- ugUGCUA---GGGGUa---CGACGCu--CCUC-CG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 129976 | 0.68 | 0.856853 |
Target: 5'- aGCGCGuGUCCgCAgaacGCcGCGGGGGcGGCg -3' miRNA: 3'- -UGUGC-UAGGgGUa---CGaCGCUCCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 193694 | 0.67 | 0.871425 |
Target: 5'- -gAUGcgCCgUCAcgGCcGCGAGGAGGCa -3' miRNA: 3'- ugUGCuaGG-GGUa-CGaCGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 109820 | 0.67 | 0.871425 |
Target: 5'- aACGCccucGUCgCCGuccUGCUGCGgcGGGGGGCc -3' miRNA: 3'- -UGUGc---UAGgGGU---ACGACGC--UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 66741 | 0.67 | 0.878413 |
Target: 5'- aGCucuuCGAUCCguaCcgGaaucGCGAGGAGGCg -3' miRNA: 3'- -UGu---GCUAGGg--GuaCga--CGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 126422 | 0.67 | 0.862042 |
Target: 5'- cCGCGGUCCCg--GCUGCGGuccagcaggaagauGGuGGCc -3' miRNA: 3'- uGUGCUAGGGguaCGACGCU--------------CCuCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 95788 | 0.67 | 0.885195 |
Target: 5'- gUACGGUCCCCGUGCacguugGUGAcaGGucgaacccGGCa -3' miRNA: 3'- uGUGCUAGGGGUACGa-----CGCU--CCu-------CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 121396 | 0.67 | 0.89177 |
Target: 5'- aACACGAUCagcaCCA-GCUGCccgccGGAcGGCg -3' miRNA: 3'- -UGUGCUAGg---GGUaCGACGcu---CCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 29918 | 0.67 | 0.89177 |
Target: 5'- cGCGCGAagUCCUCggGCUcgauauccGCuGAGGAGGa -3' miRNA: 3'- -UGUGCU--AGGGGuaCGA--------CG-CUCCUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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