miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 75919 1.12 0.002163
Target:  5'- cACACGAUCCCCAUGCUGCGAGGAGGCg -3'
miRNA:   3'- -UGUGCUAGGGGUACGACGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 158760 0.79 0.293916
Target:  5'- gGCACGGUCCUUAcacaccuucccuUGCUGCGAGGaAGGg -3'
miRNA:   3'- -UGUGCUAGGGGU------------ACGACGCUCC-UCCg -5'
15862 5' -57.5 NC_004065.1 + 116014 0.76 0.422818
Target:  5'- cCGCGAuguaaccgucgUCgaCCGUGCUgGCGAGGAGGCc -3'
miRNA:   3'- uGUGCU-----------AGg-GGUACGA-CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 188339 0.74 0.522248
Target:  5'- cCGCG-UCCCUcgcgAUGCUcagccccaGCGAGGGGGCg -3'
miRNA:   3'- uGUGCuAGGGG----UACGA--------CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 132983 0.73 0.550982
Target:  5'- cACACGAUCaggCCCGUGCcgaUGCagaaGAGGaAGGCg -3'
miRNA:   3'- -UGUGCUAG---GGGUACG---ACG----CUCC-UCCG- -5'
15862 5' -57.5 NC_004065.1 + 26874 0.73 0.58999
Target:  5'- -gACGGUCCUCggGUcGCGAGGGcGGCa -3'
miRNA:   3'- ugUGCUAGGGGuaCGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 172068 0.72 0.616601
Target:  5'- uCAUGGUCUCCAaggggGCUGUggguggaggggccgGGGGAGGCg -3'
miRNA:   3'- uGUGCUAGGGGUa----CGACG--------------CUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 42460 0.72 0.64922
Target:  5'- gACGCGGUCgCCAUGCUggcGCGAGu-GGUu -3'
miRNA:   3'- -UGUGCUAGgGGUACGA---CGCUCcuCCG- -5'
15862 5' -57.5 NC_004065.1 + 91355 0.71 0.65909
Target:  5'- cACACGAcgugCCCCGUGUacuCGGcGGGGGCg -3'
miRNA:   3'- -UGUGCUa---GGGGUACGac-GCU-CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 58506 0.71 0.67876
Target:  5'- aGCGUGAUCUguaCCGUGCUGCu-GGAGGUg -3'
miRNA:   3'- -UGUGCUAGG---GGUACGACGcuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 194345 0.71 0.67876
Target:  5'- cGCGCGAUCUCCugGCUcGCGAGcGAcguGGCg -3'
miRNA:   3'- -UGUGCUAGGGGuaCGA-CGCUC-CU---CCG- -5'
15862 5' -57.5 NC_004065.1 + 229568 0.71 0.698288
Target:  5'- cCAgGGUCCCCGgacguuacGCcGCGAGGGcGGCu -3'
miRNA:   3'- uGUgCUAGGGGUa-------CGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 34360 0.71 0.698288
Target:  5'- aGCACGccacccUCCgCCGcucgGCUGCcGGGAGGCg -3'
miRNA:   3'- -UGUGCu-----AGG-GGUa---CGACGcUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 119707 0.71 0.698288
Target:  5'- aGCACGAgCCCCGgccagaGCUGCGAGaccguGAcGGCc -3'
miRNA:   3'- -UGUGCUaGGGGUa-----CGACGCUC-----CU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 167124 0.7 0.707011
Target:  5'- uUugGAugUCCCCAUGcCUGaCGAcgggcagGGAGGCc -3'
miRNA:   3'- uGugCU--AGGGGUAC-GAC-GCU-------CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 77433 0.7 0.746055
Target:  5'- cGCAgGAUCUCCGggGUgGUGAGGGGGg -3'
miRNA:   3'- -UGUgCUAGGGGUa-CGaCGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 215812 0.69 0.764569
Target:  5'- gGCACGcgUUUCGUGCgauauUGUGAcGGAGGCg -3'
miRNA:   3'- -UGUGCuaGGGGUACG-----ACGCU-CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 147337 0.69 0.764569
Target:  5'- uCAUGG-CCacgcaCAUGCUGCGccucucggccAGGAGGCa -3'
miRNA:   3'- uGUGCUaGGg----GUACGACGC----------UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 76243 0.69 0.76822
Target:  5'- aACACGAUCCCCGagauacccagaaucgUGgU-CGAGGuGGUa -3'
miRNA:   3'- -UGUGCUAGGGGU---------------ACgAcGCUCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 50741 0.69 0.791494
Target:  5'- uGCACGGcggCUCCGUGUggucGCGuGGAGGa -3'
miRNA:   3'- -UGUGCUa--GGGGUACGa---CGCuCCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.