miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 208193 0.67 0.891122
Target:  5'- cCGCGGUaucCCCCggGCggGCGAGGAuucaagaGGUg -3'
miRNA:   3'- uGUGCUA---GGGGuaCGa-CGCUCCU-------CCG- -5'
15862 5' -57.5 NC_004065.1 + 95788 0.67 0.885195
Target:  5'- gUACGGUCCCCGUGCacguugGUGAcaGGucgaacccGGCa -3'
miRNA:   3'- uGUGCUAGGGGUACGa-----CGCU--CCu-------CCG- -5'
15862 5' -57.5 NC_004065.1 + 12919 0.67 0.884526
Target:  5'- gAUACGAUUCCCGUGUUacauuacGCGA--AGGCc -3'
miRNA:   3'- -UGUGCUAGGGGUACGA-------CGCUccUCCG- -5'
15862 5' -57.5 NC_004065.1 + 181167 0.67 0.881151
Target:  5'- cGCACGAcguccUCCCUAaaaggaaaguacgucUGCUGCggugaGAGGAuGGUg -3'
miRNA:   3'- -UGUGCU-----AGGGGU---------------ACGACG-----CUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 66741 0.67 0.878413
Target:  5'- aGCucuuCGAUCCguaCcgGaaucGCGAGGAGGCg -3'
miRNA:   3'- -UGu---GCUAGGg--GuaCga--CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 68520 0.67 0.878413
Target:  5'- gACGC-AUCUCCcgGaggcCGAGGAGGCg -3'
miRNA:   3'- -UGUGcUAGGGGuaCgac-GCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 21 0.67 0.871425
Target:  5'- cGCGCGggCCCCcgGggggguauuUUGaUGGGGGGGCu -3'
miRNA:   3'- -UGUGCuaGGGGuaC---------GAC-GCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 109820 0.67 0.871425
Target:  5'- aACGCccucGUCgCCGuccUGCUGCGgcGGGGGGCc -3'
miRNA:   3'- -UGUGc---UAGgGGU---ACGACGC--UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 193694 0.67 0.871425
Target:  5'- -gAUGcgCCgUCAcgGCcGCGAGGAGGCa -3'
miRNA:   3'- ugUGCuaGG-GGUa-CGaCGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 59812 0.67 0.870715
Target:  5'- gACAgGAgagauccUCCUCGUGCagGCGAuGGGGCu -3'
miRNA:   3'- -UGUgCU-------AGGGGUACGa-CGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 101896 0.67 0.864237
Target:  5'- -gGCGGcUCCuCCGaGCUGCugGAGGAGGa -3'
miRNA:   3'- ugUGCU-AGG-GGUaCGACG--CUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 97693 0.67 0.863507
Target:  5'- uCGCGGUCgcugccgccgccgCCCggGCUGUccAGGAGGCa -3'
miRNA:   3'- uGUGCUAG-------------GGGuaCGACGc-UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 126422 0.67 0.862042
Target:  5'- cCGCGGUCCCg--GCUGCGGuccagcaggaagauGGuGGCc -3'
miRNA:   3'- uGUGCUAGGGguaCGACGCU--------------CCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 129976 0.68 0.856853
Target:  5'- aGCGCGuGUCCgCAgaacGCcGCGGGGGcGGCg -3'
miRNA:   3'- -UGUGC-UAGGgGUa---CGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 116471 0.68 0.856853
Target:  5'- -gACGAUCCCCAgaaagGCggGCGAGcuGAgccGGCc -3'
miRNA:   3'- ugUGCUAGGGGUa----CGa-CGCUC--CU---CCG- -5'
15862 5' -57.5 NC_004065.1 + 143493 0.68 0.856853
Target:  5'- uCugGAUCCCCAcuucgcccgggaUGCUGUGAGcAGcGUc -3'
miRNA:   3'- uGugCUAGGGGU------------ACGACGCUCcUC-CG- -5'
15862 5' -57.5 NC_004065.1 + 126521 0.68 0.852332
Target:  5'- cGCGCGAUCguCCCGUGCUccaucaGCGuAcgcaacacgaagcacGGGGGCg -3'
miRNA:   3'- -UGUGCUAG--GGGUACGA------CGC-U---------------CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 4345 0.68 0.849281
Target:  5'- -aACGGUcgaCCCCAaacgGCUGCGcguGGAGcGCg -3'
miRNA:   3'- ugUGCUA---GGGGUa---CGACGCu--CCUC-CG- -5'
15862 5' -57.5 NC_004065.1 + 182405 0.68 0.841524
Target:  5'- -aACGAUCCaCCGUGUcgGCGAuguaucgagaGGAGGa -3'
miRNA:   3'- ugUGCUAGG-GGUACGa-CGCU----------CCUCCg -5'
15862 5' -57.5 NC_004065.1 + 105092 0.68 0.833589
Target:  5'- aACGCGAaCCUgGUGC-GCGuGGuGGCc -3'
miRNA:   3'- -UGUGCUaGGGgUACGaCGCuCCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.