Results 61 - 66 of 66 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 15862 | 5' | -57.5 | NC_004065.1 | + | 26874 | 0.73 | 0.58999 |
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Target: 5'- -gACGGUCCUCggGUcGCGAGGGcGGCa -3' miRNA: 3'- ugUGCUAGGGGuaCGaCGCUCCU-CCG- -5' |
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| 15862 | 5' | -57.5 | NC_004065.1 | + | 132983 | 0.73 | 0.550982 |
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Target: 5'- cACACGAUCaggCCCGUGCcgaUGCagaaGAGGaAGGCg -3' miRNA: 3'- -UGUGCUAG---GGGUACG---ACG----CUCC-UCCG- -5' |
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| 15862 | 5' | -57.5 | NC_004065.1 | + | 188339 | 0.74 | 0.522248 |
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Target: 5'- cCGCG-UCCCUcgcgAUGCUcagccccaGCGAGGGGGCg -3' miRNA: 3'- uGUGCuAGGGG----UACGA--------CGCUCCUCCG- -5' |
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| 15862 | 5' | -57.5 | NC_004065.1 | + | 116014 | 0.76 | 0.422818 |
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Target: 5'- cCGCGAuguaaccgucgUCgaCCGUGCUgGCGAGGAGGCc -3' miRNA: 3'- uGUGCU-----------AGg-GGUACGA-CGCUCCUCCG- -5' |
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| 15862 | 5' | -57.5 | NC_004065.1 | + | 158760 | 0.79 | 0.293916 |
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Target: 5'- gGCACGGUCCUUAcacaccuucccuUGCUGCGAGGaAGGg -3' miRNA: 3'- -UGUGCUAGGGGU------------ACGACGCUCC-UCCg -5' |
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| 15862 | 5' | -57.5 | NC_004065.1 | + | 75919 | 1.12 | 0.002163 |
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Target: 5'- cACACGAUCCCCAUGCUGCGAGGAGGCg -3' miRNA: 3'- -UGUGCUAGGGGUACGACGCUCCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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