miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 21 0.67 0.871425
Target:  5'- cGCGCGggCCCCcgGggggguauuUUGaUGGGGGGGCu -3'
miRNA:   3'- -UGUGCuaGGGGuaC---------GAC-GCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 989 0.66 0.898131
Target:  5'- -aACuuUCCCUugagcGCUGCG-GGAGGCc -3'
miRNA:   3'- ugUGcuAGGGGua---CGACGCuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 4345 0.68 0.849281
Target:  5'- -aACGGUcgaCCCCAaacgGCUGCGcguGGAGcGCg -3'
miRNA:   3'- ugUGCUA---GGGGUa---CGACGCu--CCUC-CG- -5'
15862 5' -57.5 NC_004065.1 + 12919 0.67 0.884526
Target:  5'- gAUACGAUUCCCGUGUUacauuacGCGA--AGGCc -3'
miRNA:   3'- -UGUGCUAGGGGUACGA-------CGCUccUCCG- -5'
15862 5' -57.5 NC_004065.1 + 26874 0.73 0.58999
Target:  5'- -gACGGUCCUCggGUcGCGAGGGcGGCa -3'
miRNA:   3'- ugUGCUAGGGGuaCGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 29918 0.67 0.89177
Target:  5'- cGCGCGAagUCCUCggGCUcgauauccGCuGAGGAGGa -3'
miRNA:   3'- -UGUGCU--AGGGGuaCGA--------CG-CUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 31230 0.69 0.791494
Target:  5'- aACGCGc-UCCUGUGUUGCGAaGAGGCc -3'
miRNA:   3'- -UGUGCuaGGGGUACGACGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 34360 0.71 0.698288
Target:  5'- aGCACGccacccUCCgCCGcucgGCUGCcGGGAGGCg -3'
miRNA:   3'- -UGUGCu-----AGG-GGUa---CGACGcUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 35475 0.66 0.919773
Target:  5'- uGCGCGGUgCCCGUgacgacguucacggGCacgaccgGCGucuuGGAGGCg -3'
miRNA:   3'- -UGUGCUAgGGGUA--------------CGa------CGCu---CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 38205 0.69 0.800212
Target:  5'- uCAUGAcCCCCGUGCggagGaCGGGcGGGGUg -3'
miRNA:   3'- uGUGCUaGGGGUACGa---C-GCUC-CUCCG- -5'
15862 5' -57.5 NC_004065.1 + 41731 0.68 0.816379
Target:  5'- gUACG--CCCCGUGCUgggaaguuacaacGCGAGGGuGGCc -3'
miRNA:   3'- uGUGCuaGGGGUACGA-------------CGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 42460 0.72 0.64922
Target:  5'- gACGCGGUCgCCAUGCUggcGCGAGu-GGUu -3'
miRNA:   3'- -UGUGCUAGgGGUACGA---CGCUCcuCCG- -5'
15862 5' -57.5 NC_004065.1 + 50741 0.69 0.791494
Target:  5'- uGCACGGcggCUCCGUGUggucGCGuGGAGGa -3'
miRNA:   3'- -UGUGCUa--GGGGUACGa---CGCuCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 58506 0.71 0.67876
Target:  5'- aGCGUGAUCUguaCCGUGCUGCu-GGAGGUg -3'
miRNA:   3'- -UGUGCUAGG---GGUACGACGcuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 59812 0.67 0.870715
Target:  5'- gACAgGAgagauccUCCUCGUGCagGCGAuGGGGCu -3'
miRNA:   3'- -UGUgCU-------AGGGGUACGa-CGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 62107 0.66 0.926656
Target:  5'- -gGCGGUCgUUAcGCUcGCG-GGAGGCg -3'
miRNA:   3'- ugUGCUAGgGGUaCGA-CGCuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 66741 0.67 0.878413
Target:  5'- aGCucuuCGAUCCguaCcgGaaucGCGAGGAGGCg -3'
miRNA:   3'- -UGu---GCUAGGg--GuaCga--CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 67983 0.66 0.926656
Target:  5'- cGCAgGAauggaCCAUGUacUGCGGGGAGGa -3'
miRNA:   3'- -UGUgCUagg--GGUACG--ACGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 68520 0.67 0.878413
Target:  5'- gACGC-AUCUCCcgGaggcCGAGGAGGCg -3'
miRNA:   3'- -UGUGcUAGGGGuaCgac-GCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 70072 0.66 0.898131
Target:  5'- cCGCGAUCCUCAaagGC-GCGGaccccGAGGCg -3'
miRNA:   3'- uGUGCUAGGGGUa--CGaCGCUc----CUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.