Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 119707 | 0.71 | 0.698288 |
Target: 5'- aGCACGAgCCCCGgccagaGCUGCGAGaccguGAcGGCc -3' miRNA: 3'- -UGUGCUaGGGGUa-----CGACGCUC-----CU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 121396 | 0.67 | 0.89177 |
Target: 5'- aACACGAUCagcaCCA-GCUGCccgccGGAcGGCg -3' miRNA: 3'- -UGUGCUAGg---GGUaCGACGcu---CCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 126422 | 0.67 | 0.862042 |
Target: 5'- cCGCGGUCCCg--GCUGCGGuccagcaggaagauGGuGGCc -3' miRNA: 3'- uGUGCUAGGGguaCGACGCU--------------CCuCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 126521 | 0.68 | 0.852332 |
Target: 5'- cGCGCGAUCguCCCGUGCUccaucaGCGuAcgcaacacgaagcacGGGGGCg -3' miRNA: 3'- -UGUGCUAG--GGGUACGA------CGC-U---------------CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 129976 | 0.68 | 0.856853 |
Target: 5'- aGCGCGuGUCCgCAgaacGCcGCGGGGGcGGCg -3' miRNA: 3'- -UGUGC-UAGGgGUa---CGaCGCUCCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 130172 | 0.66 | 0.926656 |
Target: 5'- cCGCGA-CCCCGgcgccaucUGgUGCGAcGGGGCc -3' miRNA: 3'- uGUGCUaGGGGU--------ACgACGCUcCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 132983 | 0.73 | 0.550982 |
Target: 5'- cACACGAUCaggCCCGUGCcgaUGCagaaGAGGaAGGCg -3' miRNA: 3'- -UGUGCUAG---GGGUACG---ACG----CUCC-UCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 139837 | 0.66 | 0.921395 |
Target: 5'- cCugGAgUCCCGggagGCggGCGAcggcGGAGGCg -3' miRNA: 3'- uGugCUaGGGGUa---CGa-CGCU----CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 143493 | 0.68 | 0.856853 |
Target: 5'- uCugGAUCCCCAcuucgcccgggaUGCUGUGAGcAGcGUc -3' miRNA: 3'- uGugCUAGGGGU------------ACGACGCUCcUC-CG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 146327 | 0.66 | 0.898131 |
Target: 5'- uGCGCGA-UgCCAUGCaGCGccucuucaAGGAGGUc -3' miRNA: 3'- -UGUGCUaGgGGUACGaCGC--------UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 147337 | 0.69 | 0.764569 |
Target: 5'- uCAUGG-CCacgcaCAUGCUGCGccucucggccAGGAGGCa -3' miRNA: 3'- uGUGCUaGGg----GUACGACGC----------UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 158338 | 0.68 | 0.824664 |
Target: 5'- gACGCGccgCuCCCGuugccgccgccgcUGCUGCugcuGAGGAGGCc -3' miRNA: 3'- -UGUGCua-G-GGGU-------------ACGACG----CUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 158704 | 0.68 | 0.825484 |
Target: 5'- cCGCGAUgCCCAacaGgaGCGAGGAGa- -3' miRNA: 3'- uGUGCUAgGGGUa--CgaCGCUCCUCcg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 158760 | 0.79 | 0.293916 |
Target: 5'- gGCACGGUCCUUAcacaccuucccuUGCUGCGAGGaAGGg -3' miRNA: 3'- -UGUGCUAGGGGU------------ACGACGCUCC-UCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 167124 | 0.7 | 0.707011 |
Target: 5'- uUugGAugUCCCCAUGcCUGaCGAcgggcagGGAGGCc -3' miRNA: 3'- uGugCU--AGGGGUAC-GAC-GCU-------CCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 172068 | 0.72 | 0.616601 |
Target: 5'- uCAUGGUCUCCAaggggGCUGUggguggaggggccgGGGGAGGCg -3' miRNA: 3'- uGUGCUAGGGGUa----CGACG--------------CUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 181167 | 0.67 | 0.881151 |
Target: 5'- cGCACGAcguccUCCCUAaaaggaaaguacgucUGCUGCggugaGAGGAuGGUg -3' miRNA: 3'- -UGUGCU-----AGGGGU---------------ACGACG-----CUCCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 182405 | 0.68 | 0.841524 |
Target: 5'- -aACGAUCCaCCGUGUcgGCGAuguaucgagaGGAGGa -3' miRNA: 3'- ugUGCUAGG-GGUACGa-CGCU----------CCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 188339 | 0.74 | 0.522248 |
Target: 5'- cCGCG-UCCCUcgcgAUGCUcagccccaGCGAGGGGGCg -3' miRNA: 3'- uGUGCuAGGGG----UACGA--------CGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 193379 | 0.66 | 0.898131 |
Target: 5'- uGCGCGAUCgCCGacGUUGaucuGGGGGGCg -3' miRNA: 3'- -UGUGCUAGgGGUa-CGACgc--UCCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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