miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 130172 0.66 0.926656
Target:  5'- cCGCGA-CCCCGgcgccaucUGgUGCGAcGGGGCc -3'
miRNA:   3'- uGUGCUaGGGGU--------ACgACGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 129976 0.68 0.856853
Target:  5'- aGCGCGuGUCCgCAgaacGCcGCGGGGGcGGCg -3'
miRNA:   3'- -UGUGC-UAGGgGUa---CGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 126521 0.68 0.852332
Target:  5'- cGCGCGAUCguCCCGUGCUccaucaGCGuAcgcaacacgaagcacGGGGGCg -3'
miRNA:   3'- -UGUGCUAG--GGGUACGA------CGC-U---------------CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 126422 0.67 0.862042
Target:  5'- cCGCGGUCCCg--GCUGCGGuccagcaggaagauGGuGGCc -3'
miRNA:   3'- uGUGCUAGGGguaCGACGCU--------------CCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 121396 0.67 0.89177
Target:  5'- aACACGAUCagcaCCA-GCUGCccgccGGAcGGCg -3'
miRNA:   3'- -UGUGCUAGg---GGUaCGACGcu---CCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 119707 0.71 0.698288
Target:  5'- aGCACGAgCCCCGgccagaGCUGCGAGaccguGAcGGCc -3'
miRNA:   3'- -UGUGCUaGGGGUa-----CGACGCUC-----CU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 119660 0.66 0.910203
Target:  5'- uGCGCGAgaggUCCCAgccGCUGCGGu--GGCu -3'
miRNA:   3'- -UGUGCUa---GGGGUa--CGACGCUccuCCG- -5'
15862 5' -57.5 NC_004065.1 + 119424 0.66 0.904276
Target:  5'- -gACGGucuucaUCCCCGUGC-GCGuGGuGGUc -3'
miRNA:   3'- ugUGCU------AGGGGUACGaCGCuCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 116471 0.68 0.856853
Target:  5'- -gACGAUCCCCAgaaagGCggGCGAGcuGAgccGGCc -3'
miRNA:   3'- ugUGCUAGGGGUa----CGa-CGCUC--CU---CCG- -5'
15862 5' -57.5 NC_004065.1 + 116014 0.76 0.422818
Target:  5'- cCGCGAuguaaccgucgUCgaCCGUGCUgGCGAGGAGGCc -3'
miRNA:   3'- uGUGCU-----------AGg-GGUACGA-CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 111404 0.66 0.919773
Target:  5'- uGCGCGAccgggccggauuccUCCCCGU-CUGUGAGaugcaGGGCc -3'
miRNA:   3'- -UGUGCU--------------AGGGGUAcGACGCUCc----UCCG- -5'
15862 5' -57.5 NC_004065.1 + 109820 0.67 0.871425
Target:  5'- aACGCccucGUCgCCGuccUGCUGCGgcGGGGGGCc -3'
miRNA:   3'- -UGUGc---UAGgGGU---ACGACGC--UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 108353 0.66 0.910203
Target:  5'- gGCACGAgCUCCuUGUUcGCGGGGAGu- -3'
miRNA:   3'- -UGUGCUaGGGGuACGA-CGCUCCUCcg -5'
15862 5' -57.5 NC_004065.1 + 107420 0.66 0.926656
Target:  5'- gACugGGaCCUCGUGCUGCccuGGAucgugcccauGGCg -3'
miRNA:   3'- -UGugCUaGGGGUACGACGcu-CCU----------CCG- -5'
15862 5' -57.5 NC_004065.1 + 107327 0.66 0.91591
Target:  5'- aACACGggUCCCGUgaGCUGgGAGaAGGg -3'
miRNA:   3'- -UGUGCuaGGGGUA--CGACgCUCcUCCg -5'
15862 5' -57.5 NC_004065.1 + 105373 0.66 0.920315
Target:  5'- -gGCGGa-CCCGgacucgcugacgGCcgGCGAGGAGGCg -3'
miRNA:   3'- ugUGCUagGGGUa-----------CGa-CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 105092 0.68 0.833589
Target:  5'- aACGCGAaCCUgGUGC-GCGuGGuGGCc -3'
miRNA:   3'- -UGUGCUaGGGgUACGaCGCuCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 101896 0.67 0.864237
Target:  5'- -gGCGGcUCCuCCGaGCUGCugGAGGAGGa -3'
miRNA:   3'- ugUGCU-AGG-GGUaCGACG--CUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 97693 0.67 0.863507
Target:  5'- uCGCGGUCgcugccgccgccgCCCggGCUGUccAGGAGGCa -3'
miRNA:   3'- uGUGCUAG-------------GGGuaCGACGc-UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 95788 0.67 0.885195
Target:  5'- gUACGGUCCCCGUGCacguugGUGAcaGGucgaacccGGCa -3'
miRNA:   3'- uGUGCUAGGGGUACGa-----CGCU--CCu-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.