miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 109820 0.67 0.871425
Target:  5'- aACGCccucGUCgCCGuccUGCUGCGgcGGGGGGCc -3'
miRNA:   3'- -UGUGc---UAGgGGU---ACGACGC--UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 38205 0.69 0.800212
Target:  5'- uCAUGAcCCCCGUGCggagGaCGGGcGGGGUg -3'
miRNA:   3'- uGUGCUaGGGGUACGa---C-GCUC-CUCCG- -5'
15862 5' -57.5 NC_004065.1 + 126521 0.68 0.852332
Target:  5'- cGCGCGAUCguCCCGUGCUccaucaGCGuAcgcaacacgaagcacGGGGGCg -3'
miRNA:   3'- -UGUGCUAG--GGGUACGA------CGC-U---------------CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 143493 0.68 0.856853
Target:  5'- uCugGAUCCCCAcuucgcccgggaUGCUGUGAGcAGcGUc -3'
miRNA:   3'- uGugCUAGGGGU------------ACGACGCUCcUC-CG- -5'
15862 5' -57.5 NC_004065.1 + 126422 0.67 0.862042
Target:  5'- cCGCGGUCCCg--GCUGCGGuccagcaggaagauGGuGGCc -3'
miRNA:   3'- uGUGCUAGGGguaCGACGCU--------------CCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 97693 0.67 0.863507
Target:  5'- uCGCGGUCgcugccgccgccgCCCggGCUGUccAGGAGGCa -3'
miRNA:   3'- uGUGCUAG-------------GGGuaCGACGc-UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 101896 0.67 0.864237
Target:  5'- -gGCGGcUCCuCCGaGCUGCugGAGGAGGa -3'
miRNA:   3'- ugUGCU-AGG-GGUaCGACG--CUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 59812 0.67 0.870715
Target:  5'- gACAgGAgagauccUCCUCGUGCagGCGAuGGGGCu -3'
miRNA:   3'- -UGUgCU-------AGGGGUACGa-CGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 21 0.67 0.871425
Target:  5'- cGCGCGggCCCCcgGggggguauuUUGaUGGGGGGGCu -3'
miRNA:   3'- -UGUGCuaGGGGuaC---------GAC-GCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 75748 0.69 0.800212
Target:  5'- cGCAgGcugCCCCAgcGCUGacccgGGGGAGGCg -3'
miRNA:   3'- -UGUgCua-GGGGUa-CGACg----CUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 50741 0.69 0.791494
Target:  5'- uGCACGGcggCUCCGUGUggucGCGuGGAGGa -3'
miRNA:   3'- -UGUGCUa--GGGGUACGa---CGCuCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 215812 0.69 0.764569
Target:  5'- gGCACGcgUUUCGUGCgauauUGUGAcGGAGGCg -3'
miRNA:   3'- -UGUGCuaGGGGUACG-----ACGCU-CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 132983 0.73 0.550982
Target:  5'- cACACGAUCaggCCCGUGCcgaUGCagaaGAGGaAGGCg -3'
miRNA:   3'- -UGUGCUAG---GGGUACG---ACG----CUCC-UCCG- -5'
15862 5' -57.5 NC_004065.1 + 42460 0.72 0.64922
Target:  5'- gACGCGGUCgCCAUGCUggcGCGAGu-GGUu -3'
miRNA:   3'- -UGUGCUAGgGGUACGA---CGCUCcuCCG- -5'
15862 5' -57.5 NC_004065.1 + 91355 0.71 0.65909
Target:  5'- cACACGAcgugCCCCGUGUacuCGGcGGGGGCg -3'
miRNA:   3'- -UGUGCUa---GGGGUACGac-GCU-CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 58506 0.71 0.67876
Target:  5'- aGCGUGAUCUguaCCGUGCUGCu-GGAGGUg -3'
miRNA:   3'- -UGUGCUAGG---GGUACGACGcuCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 194345 0.71 0.67876
Target:  5'- cGCGCGAUCUCCugGCUcGCGAGcGAcguGGCg -3'
miRNA:   3'- -UGUGCUAGGGGuaCGA-CGCUC-CU---CCG- -5'
15862 5' -57.5 NC_004065.1 + 34360 0.71 0.698288
Target:  5'- aGCACGccacccUCCgCCGcucgGCUGCcGGGAGGCg -3'
miRNA:   3'- -UGUGCu-----AGG-GGUa---CGACGcUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 229568 0.71 0.698288
Target:  5'- cCAgGGUCCCCGgacguuacGCcGCGAGGGcGGCu -3'
miRNA:   3'- uGUgCUAGGGGUa-------CGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 147337 0.69 0.764569
Target:  5'- uCAUGG-CCacgcaCAUGCUGCGccucucggccAGGAGGCa -3'
miRNA:   3'- uGUGCUaGGg----GUACGACGC----------UCCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.