Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 31230 | 0.69 | 0.791494 |
Target: 5'- aACGCGc-UCCUGUGUUGCGAaGAGGCc -3' miRNA: 3'- -UGUGCuaGGGGUACGACGCUcCUCCG- -5' |
|||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 41731 | 0.68 | 0.816379 |
Target: 5'- gUACG--CCCCGUGCUgggaaguuacaacGCGAGGGuGGCc -3' miRNA: 3'- uGUGCuaGGGGUACGA-------------CGCUCCU-CCG- -5' |
|||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 158338 | 0.68 | 0.824664 |
Target: 5'- gACGCGccgCuCCCGuugccgccgccgcUGCUGCugcuGAGGAGGCc -3' miRNA: 3'- -UGUGCua-G-GGGU-------------ACGACG----CUCCUCCG- -5' |
|||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 158704 | 0.68 | 0.825484 |
Target: 5'- cCGCGAUgCCCAacaGgaGCGAGGAGa- -3' miRNA: 3'- uGUGCUAgGGGUa--CgaCGCUCCUCcg -5' |
|||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 105092 | 0.68 | 0.833589 |
Target: 5'- aACGCGAaCCUgGUGC-GCGuGGuGGCc -3' miRNA: 3'- -UGUGCUaGGGgUACGaCGCuCCuCCG- -5' |
|||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 75919 | 1.12 | 0.002163 |
Target: 5'- cACACGAUCCCCAUGCUGCGAGGAGGCg -3' miRNA: 3'- -UGUGCUAGGGGUACGACGCUCCUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home