miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 75919 1.12 0.002163
Target:  5'- cACACGAUCCCCAUGCUGCGAGGAGGCg -3'
miRNA:   3'- -UGUGCUAGGGGUACGACGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 129976 0.68 0.856853
Target:  5'- aGCGCGuGUCCgCAgaacGCcGCGGGGGcGGCg -3'
miRNA:   3'- -UGUGC-UAGGgGUa---CGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 181167 0.67 0.881151
Target:  5'- cGCACGAcguccUCCCUAaaaggaaaguacgucUGCUGCggugaGAGGAuGGUg -3'
miRNA:   3'- -UGUGCU-----AGGGGU---------------ACGACG-----CUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 200365 0.66 0.926656
Target:  5'- -gGCG-UCCUCuucGCcgGCGAGGAGGg -3'
miRNA:   3'- ugUGCuAGGGGua-CGa-CGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 172068 0.72 0.616601
Target:  5'- uCAUGGUCUCCAaggggGCUGUggguggaggggccgGGGGAGGCg -3'
miRNA:   3'- uGUGCUAGGGGUa----CGACG--------------CUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 119707 0.71 0.698288
Target:  5'- aGCACGAgCCCCGgccagaGCUGCGAGaccguGAcGGCc -3'
miRNA:   3'- -UGUGCUaGGGGUa-----CGACGCUC-----CU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 77433 0.7 0.746055
Target:  5'- cGCAgGAUCUCCGggGUgGUGAGGGGGg -3'
miRNA:   3'- -UGUgCUAGGGGUa-CGaCGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 76243 0.69 0.76822
Target:  5'- aACACGAUCCCCGagauacccagaaucgUGgU-CGAGGuGGUa -3'
miRNA:   3'- -UGUGCUAGGGGU---------------ACgAcGCUCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 158338 0.68 0.824664
Target:  5'- gACGCGccgCuCCCGuugccgccgccgcUGCUGCugcuGAGGAGGCc -3'
miRNA:   3'- -UGUGCua-G-GGGU-------------ACGACG----CUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 116471 0.68 0.856853
Target:  5'- -gACGAUCCCCAgaaagGCggGCGAGcuGAgccGGCc -3'
miRNA:   3'- ugUGCUAGGGGUa----CGa-CGCUC--CU---CCG- -5'
15862 5' -57.5 NC_004065.1 + 105092 0.68 0.833589
Target:  5'- aACGCGAaCCUgGUGC-GCGuGGuGGCc -3'
miRNA:   3'- -UGUGCUaGGGgUACGaCGCuCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 41731 0.68 0.816379
Target:  5'- gUACG--CCCCGUGCUgggaaguuacaacGCGAGGGuGGCc -3'
miRNA:   3'- uGUGCuaGGGGUACGA-------------CGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 116014 0.76 0.422818
Target:  5'- cCGCGAuguaaccgucgUCgaCCGUGCUgGCGAGGAGGCc -3'
miRNA:   3'- uGUGCU-----------AGg-GGUACGA-CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 182405 0.68 0.841524
Target:  5'- -aACGAUCCaCCGUGUcgGCGAuguaucgagaGGAGGa -3'
miRNA:   3'- ugUGCUAGG-GGUACGa-CGCU----------CCUCCg -5'
15862 5' -57.5 NC_004065.1 + 188339 0.74 0.522248
Target:  5'- cCGCG-UCCCUcgcgAUGCUcagccccaGCGAGGGGGCg -3'
miRNA:   3'- uGUGCuAGGGG----UACGA--------CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 31230 0.69 0.791494
Target:  5'- aACGCGc-UCCUGUGUUGCGAaGAGGCc -3'
miRNA:   3'- -UGUGCuaGGGGUACGACGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 4345 0.68 0.849281
Target:  5'- -aACGGUcgaCCCCAaacgGCUGCGcguGGAGcGCg -3'
miRNA:   3'- ugUGCUA---GGGGUa---CGACGCu--CCUC-CG- -5'
15862 5' -57.5 NC_004065.1 + 68520 0.67 0.878413
Target:  5'- gACGC-AUCUCCcgGaggcCGAGGAGGCg -3'
miRNA:   3'- -UGUGcUAGGGGuaCgac-GCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 26874 0.73 0.58999
Target:  5'- -gACGGUCCUCggGUcGCGAGGGcGGCa -3'
miRNA:   3'- ugUGCUAGGGGuaCGaCGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 167124 0.7 0.707011
Target:  5'- uUugGAugUCCCCAUGcCUGaCGAcgggcagGGAGGCc -3'
miRNA:   3'- uGugCU--AGGGGUAC-GAC-GCU-------CCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.