miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15862 5' -57.5 NC_004065.1 + 31230 0.69 0.791494
Target:  5'- aACGCGc-UCCUGUGUUGCGAaGAGGCc -3'
miRNA:   3'- -UGUGCuaGGGGUACGACGCUcCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 105373 0.66 0.920315
Target:  5'- -gGCGGa-CCCGgacucgcugacgGCcgGCGAGGAGGCg -3'
miRNA:   3'- ugUGCUagGGGUa-----------CGa-CGCUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 181167 0.67 0.881151
Target:  5'- cGCACGAcguccUCCCUAaaaggaaaguacgucUGCUGCggugaGAGGAuGGUg -3'
miRNA:   3'- -UGUGCU-----AGGGGU---------------ACGACG-----CUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 76243 0.69 0.76822
Target:  5'- aACACGAUCCCCGagauacccagaaucgUGgU-CGAGGuGGUa -3'
miRNA:   3'- -UGUGCUAGGGGU---------------ACgAcGCUCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 193379 0.66 0.898131
Target:  5'- uGCGCGAUCgCCGacGUUGaucuGGGGGGCg -3'
miRNA:   3'- -UGUGCUAGgGGUa-CGACgc--UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 139837 0.66 0.921395
Target:  5'- cCugGAgUCCCGggagGCggGCGAcggcGGAGGCg -3'
miRNA:   3'- uGugCUaGGGGUa---CGa-CGCU----CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 107327 0.66 0.91591
Target:  5'- aACACGggUCCCGUgaGCUGgGAGaAGGg -3'
miRNA:   3'- -UGUGCuaGGGGUA--CGACgCUCcUCCg -5'
15862 5' -57.5 NC_004065.1 + 77433 0.7 0.746055
Target:  5'- cGCAgGAUCUCCGggGUgGUGAGGGGGg -3'
miRNA:   3'- -UGUgCUAGGGGUa-CGaCGCUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 167124 0.7 0.707011
Target:  5'- uUugGAugUCCCCAUGcCUGaCGAcgggcagGGAGGCc -3'
miRNA:   3'- uGugCU--AGGGGUAC-GAC-GCU-------CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 41731 0.68 0.816379
Target:  5'- gUACG--CCCCGUGCUgggaaguuacaacGCGAGGGuGGCc -3'
miRNA:   3'- uGUGCuaGGGGUACGA-------------CGCUCCU-CCG- -5'
15862 5' -57.5 NC_004065.1 + 116471 0.68 0.856853
Target:  5'- -gACGAUCCCCAgaaagGCggGCGAGcuGAgccGGCc -3'
miRNA:   3'- ugUGCUAGGGGUa----CGa-CGCUC--CU---CCG- -5'
15862 5' -57.5 NC_004065.1 + 34360 0.71 0.698288
Target:  5'- aGCACGccacccUCCgCCGcucgGCUGCcGGGAGGCg -3'
miRNA:   3'- -UGUGCu-----AGG-GGUa---CGACGcUCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 111404 0.66 0.919773
Target:  5'- uGCGCGAccgggccggauuccUCCCCGU-CUGUGAGaugcaGGGCc -3'
miRNA:   3'- -UGUGCU--------------AGGGGUAcGACGCUCc----UCCG- -5'
15862 5' -57.5 NC_004065.1 + 119424 0.66 0.904276
Target:  5'- -gACGGucuucaUCCCCGUGC-GCGuGGuGGUc -3'
miRNA:   3'- ugUGCU------AGGGGUACGaCGCuCCuCCG- -5'
15862 5' -57.5 NC_004065.1 + 70072 0.66 0.898131
Target:  5'- cCGCGAUCCUCAaagGC-GCGGaccccGAGGCg -3'
miRNA:   3'- uGUGCUAGGGGUa--CGaCGCUc----CUCCG- -5'
15862 5' -57.5 NC_004065.1 + 146327 0.66 0.898131
Target:  5'- uGCGCGA-UgCCAUGCaGCGccucuucaAGGAGGUc -3'
miRNA:   3'- -UGUGCUaGgGGUACGaCGC--------UCCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 29918 0.67 0.89177
Target:  5'- cGCGCGAagUCCUCggGCUcgauauccGCuGAGGAGGa -3'
miRNA:   3'- -UGUGCU--AGGGGuaCGA--------CG-CUCCUCCg -5'
15862 5' -57.5 NC_004065.1 + 38205 0.69 0.800212
Target:  5'- uCAUGAcCCCCGUGCggagGaCGGGcGGGGUg -3'
miRNA:   3'- uGUGCUaGGGGUACGa---C-GCUC-CUCCG- -5'
15862 5' -57.5 NC_004065.1 + 126521 0.68 0.852332
Target:  5'- cGCGCGAUCguCCCGUGCUccaucaGCGuAcgcaacacgaagcacGGGGGCg -3'
miRNA:   3'- -UGUGCUAG--GGGUACGA------CGC-U---------------CCUCCG- -5'
15862 5' -57.5 NC_004065.1 + 143493 0.68 0.856853
Target:  5'- uCugGAUCCCCAcuucgcccgggaUGCUGUGAGcAGcGUc -3'
miRNA:   3'- uGugCUAGGGGU------------ACGACGCUCcUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.