Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15862 | 5' | -57.5 | NC_004065.1 | + | 34360 | 0.71 | 0.698288 |
Target: 5'- aGCACGccacccUCCgCCGcucgGCUGCcGGGAGGCg -3' miRNA: 3'- -UGUGCu-----AGG-GGUa---CGACGcUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 194345 | 0.71 | 0.67876 |
Target: 5'- cGCGCGAUCUCCugGCUcGCGAGcGAcguGGCg -3' miRNA: 3'- -UGUGCUAGGGGuaCGA-CGCUC-CU---CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 147337 | 0.69 | 0.764569 |
Target: 5'- uCAUGG-CCacgcaCAUGCUGCGccucucggccAGGAGGCa -3' miRNA: 3'- uGUGCUaGGg----GUACGACGC----------UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 97693 | 0.67 | 0.863507 |
Target: 5'- uCGCGGUCgcugccgccgccgCCCggGCUGUccAGGAGGCa -3' miRNA: 3'- uGUGCUAG-------------GGGuaCGACGc-UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 101896 | 0.67 | 0.864237 |
Target: 5'- -gGCGGcUCCuCCGaGCUGCugGAGGAGGa -3' miRNA: 3'- ugUGCU-AGG-GGUaCGACG--CUCCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 146327 | 0.66 | 0.898131 |
Target: 5'- uGCGCGA-UgCCAUGCaGCGccucuucaAGGAGGUc -3' miRNA: 3'- -UGUGCUaGgGGUACGaCGC--------UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 70072 | 0.66 | 0.898131 |
Target: 5'- cCGCGAUCCUCAaagGC-GCGGaccccGAGGCg -3' miRNA: 3'- uGUGCUAGGGGUa--CGaCGCUc----CUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 119424 | 0.66 | 0.904276 |
Target: 5'- -gACGGucuucaUCCCCGUGC-GCGuGGuGGUc -3' miRNA: 3'- ugUGCU------AGGGGUACGaCGCuCCuCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 111404 | 0.66 | 0.919773 |
Target: 5'- uGCGCGAccgggccggauuccUCCCCGU-CUGUGAGaugcaGGGCc -3' miRNA: 3'- -UGUGCU--------------AGGGGUAcGACGCUCc----UCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 121396 | 0.67 | 0.89177 |
Target: 5'- aACACGAUCagcaCCA-GCUGCccgccGGAcGGCg -3' miRNA: 3'- -UGUGCUAGg---GGUaCGACGcu---CCU-CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 67983 | 0.66 | 0.926656 |
Target: 5'- cGCAgGAauggaCCAUGUacUGCGGGGAGGa -3' miRNA: 3'- -UGUgCUagg--GGUACG--ACGCUCCUCCg -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 130172 | 0.66 | 0.926656 |
Target: 5'- cCGCGA-CCCCGgcgccaucUGgUGCGAcGGGGCc -3' miRNA: 3'- uGUGCUaGGGGU--------ACgACGCUcCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 62107 | 0.66 | 0.926656 |
Target: 5'- -gGCGGUCgUUAcGCUcGCG-GGAGGCg -3' miRNA: 3'- ugUGCUAGgGGUaCGA-CGCuCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 71025 | 0.66 | 0.926656 |
Target: 5'- aGCugGAggCCaagagaGUGgucgGCGGGGAGGCa -3' miRNA: 3'- -UGugCUagGGg-----UACga--CGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 66741 | 0.67 | 0.878413 |
Target: 5'- aGCucuuCGAUCCguaCcgGaaucGCGAGGAGGCg -3' miRNA: 3'- -UGu---GCUAGGg--GuaCga--CGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 95788 | 0.67 | 0.885195 |
Target: 5'- gUACGGUCCCCGUGCacguugGUGAcaGGucgaacccGGCa -3' miRNA: 3'- uGUGCUAGGGGUACGa-----CGCU--CCu-------CCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 193694 | 0.67 | 0.871425 |
Target: 5'- -gAUGcgCCgUCAcgGCcGCGAGGAGGCa -3' miRNA: 3'- ugUGCuaGG-GGUa-CGaCGCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 109820 | 0.67 | 0.871425 |
Target: 5'- aACGCccucGUCgCCGuccUGCUGCGgcGGGGGGCc -3' miRNA: 3'- -UGUGc---UAGgGGU---ACGACGC--UCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 21 | 0.67 | 0.871425 |
Target: 5'- cGCGCGggCCCCcgGggggguauuUUGaUGGGGGGGCu -3' miRNA: 3'- -UGUGCuaGGGGuaC---------GAC-GCUCCUCCG- -5' |
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15862 | 5' | -57.5 | NC_004065.1 | + | 59812 | 0.67 | 0.870715 |
Target: 5'- gACAgGAgagauccUCCUCGUGCagGCGAuGGGGCu -3' miRNA: 3'- -UGUgCU-------AGGGGUACGa-CGCUcCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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