miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 3' -51.2 NC_004065.1 + 177382 0.66 0.998756
Target:  5'- --cGGAUGUgCAGCCGGuguucCCGACG-Cu -3'
miRNA:   3'- cuaUCUACAgGUUGGCU-----GGCUGCuGu -5'
15864 3' -51.2 NC_004065.1 + 43280 0.66 0.998756
Target:  5'- --gGGAUGUCCGGCgUGG-CGACGaACAc -3'
miRNA:   3'- cuaUCUACAGGUUG-GCUgGCUGC-UGU- -5'
15864 3' -51.2 NC_004065.1 + 201862 0.66 0.998733
Target:  5'- aGAUGGcgGUUCAggucguaGCCGgucacgcagagGCCGAUGGCGu -3'
miRNA:   3'- -CUAUCuaCAGGU-------UGGC-----------UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 2539 0.66 0.998505
Target:  5'- --cGGcugGUCCGAUCGGUCGACGGCc -3'
miRNA:   3'- cuaUCua-CAGGUUGGCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 224376 0.66 0.998478
Target:  5'- --aGGAUGUCCAugUGGcggcguuCCGuCGGCGu -3'
miRNA:   3'- cuaUCUACAGGUugGCU-------GGCuGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 73209 0.66 0.998213
Target:  5'- --aAGGUGUCCAGCauCGuGCCGAagGACGc -3'
miRNA:   3'- cuaUCUACAGGUUG--GC-UGGCUg-CUGU- -5'
15864 3' -51.2 NC_004065.1 + 12812 0.66 0.998213
Target:  5'- aGGUAGAauUCUguaAugUGACCGGCGGCu -3'
miRNA:   3'- -CUAUCUacAGG---UugGCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 32078 0.66 0.998016
Target:  5'- --gAGAacUG-CCGcgaccgcuucgacucGCCGACCGACGAUg -3'
miRNA:   3'- cuaUCU--ACaGGU---------------UGGCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 57828 0.66 0.997874
Target:  5'- --gAGAUcagcGUCCcuccggagaCGACCGACGACGg -3'
miRNA:   3'- cuaUCUA----CAGGuug------GCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 70862 0.66 0.997874
Target:  5'- --gGGAUGUUCGcCCaGCUGGCGACc -3'
miRNA:   3'- cuaUCUACAGGUuGGcUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 83672 0.66 0.997874
Target:  5'- ---cGAUGUCCAGcCCGAucagggugUCGACGAg- -3'
miRNA:   3'- cuauCUACAGGUU-GGCU--------GGCUGCUgu -5'
15864 3' -51.2 NC_004065.1 + 115183 0.66 0.997874
Target:  5'- --aGGAUGgcccuggaUCCGGCCGugGCCGccGCGACGg -3'
miRNA:   3'- cuaUCUAC--------AGGUUGGC--UGGC--UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 164072 0.66 0.997483
Target:  5'- cGAUGGAacucggUGUUCGucuGCCGAUgguaCGGCGACGg -3'
miRNA:   3'- -CUAUCU------ACAGGU---UGGCUG----GCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 31701 0.66 0.997483
Target:  5'- ---cGGUGcCCGAgCGuGCCGAUGACGg -3'
miRNA:   3'- cuauCUACaGGUUgGC-UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 204750 0.66 0.997483
Target:  5'- --aGGGUGUacgcCCGACaGGCCGGgGACAg -3'
miRNA:   3'- cuaUCUACA----GGUUGgCUGGCUgCUGU- -5'
15864 3' -51.2 NC_004065.1 + 60528 0.66 0.997398
Target:  5'- gGAUGGggGUaCAGCCGACgaagccgccggaGACGACGg -3'
miRNA:   3'- -CUAUCuaCAgGUUGGCUGg-----------CUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 121832 0.66 0.997033
Target:  5'- aGAUAGGgcccugcgacGUCCGcaccCCGACCcGCGACAu -3'
miRNA:   3'- -CUAUCUa---------CAGGUu---GGCUGGcUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 38001 0.67 0.996519
Target:  5'- ---cGGUGUgUCAACCGACCG-UGACc -3'
miRNA:   3'- cuauCUACA-GGUUGGCUGGCuGCUGu -5'
15864 3' -51.2 NC_004065.1 + 68843 0.67 0.996294
Target:  5'- --cAGGUGcacgugcaacucgCCAGCUGACCGAgGACc -3'
miRNA:   3'- cuaUCUACa------------GGUUGGCUGGCUgCUGu -5'
15864 3' -51.2 NC_004065.1 + 183430 0.67 0.995934
Target:  5'- uGGUGGAgcacGaUCAugCGGCCGAcCGACAg -3'
miRNA:   3'- -CUAUCUa---CaGGUugGCUGGCU-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.