Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 204750 | 0.66 | 0.997483 |
Target: 5'- --aGGGUGUacgcCCGACaGGCCGGgGACAg -3' miRNA: 3'- cuaUCUACA----GGUUGgCUGGCUgCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 2539 | 0.66 | 0.998505 |
Target: 5'- --cGGcugGUCCGAUCGGUCGACGGCc -3' miRNA: 3'- cuaUCua-CAGGUUGGCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 32078 | 0.66 | 0.998016 |
Target: 5'- --gAGAacUG-CCGcgaccgcuucgacucGCCGACCGACGAUg -3' miRNA: 3'- cuaUCU--ACaGGU---------------UGGCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 57828 | 0.66 | 0.997874 |
Target: 5'- --gAGAUcagcGUCCcuccggagaCGACCGACGACGg -3' miRNA: 3'- cuaUCUA----CAGGuug------GCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 12812 | 0.66 | 0.998213 |
Target: 5'- aGGUAGAauUCUguaAugUGACCGGCGGCu -3' miRNA: 3'- -CUAUCUacAGG---UugGCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 177382 | 0.66 | 0.998756 |
Target: 5'- --cGGAUGUgCAGCCGGuguucCCGACG-Cu -3' miRNA: 3'- cuaUCUACAgGUUGGCU-----GGCUGCuGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 121832 | 0.66 | 0.997033 |
Target: 5'- aGAUAGGgcccugcgacGUCCGcaccCCGACCcGCGACAu -3' miRNA: 3'- -CUAUCUa---------CAGGUu---GGCUGGcUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 43280 | 0.66 | 0.998756 |
Target: 5'- --gGGAUGUCCGGCgUGG-CGACGaACAc -3' miRNA: 3'- cuaUCUACAGGUUG-GCUgGCUGC-UGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 201862 | 0.66 | 0.998733 |
Target: 5'- aGAUGGcgGUUCAggucguaGCCGgucacgcagagGCCGAUGGCGu -3' miRNA: 3'- -CUAUCuaCAGGU-------UGGC-----------UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 224376 | 0.66 | 0.998478 |
Target: 5'- --aGGAUGUCCAugUGGcggcguuCCGuCGGCGu -3' miRNA: 3'- cuaUCUACAGGUugGCU-------GGCuGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 60528 | 0.66 | 0.997398 |
Target: 5'- gGAUGGggGUaCAGCCGACgaagccgccggaGACGACGg -3' miRNA: 3'- -CUAUCuaCAgGUUGGCUGg-----------CUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 31701 | 0.66 | 0.997483 |
Target: 5'- ---cGGUGcCCGAgCGuGCCGAUGACGg -3' miRNA: 3'- cuauCUACaGGUUgGC-UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 164072 | 0.66 | 0.997483 |
Target: 5'- cGAUGGAacucggUGUUCGucuGCCGAUgguaCGGCGACGg -3' miRNA: 3'- -CUAUCU------ACAGGU---UGGCUG----GCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 83672 | 0.66 | 0.997874 |
Target: 5'- ---cGAUGUCCAGcCCGAucagggugUCGACGAg- -3' miRNA: 3'- cuauCUACAGGUU-GGCU--------GGCUGCUgu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 70862 | 0.66 | 0.997874 |
Target: 5'- --gGGAUGUUCGcCCaGCUGGCGACc -3' miRNA: 3'- cuaUCUACAGGUuGGcUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 115183 | 0.66 | 0.997874 |
Target: 5'- --aGGAUGgcccuggaUCCGGCCGugGCCGccGCGACGg -3' miRNA: 3'- cuaUCUAC--------AGGUUGGC--UGGC--UGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 73209 | 0.66 | 0.998213 |
Target: 5'- --aAGGUGUCCAGCauCGuGCCGAagGACGc -3' miRNA: 3'- cuaUCUACAGGUUG--GC-UGGCUg-CUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 183430 | 0.67 | 0.995934 |
Target: 5'- uGGUGGAgcacGaUCAugCGGCCGAcCGACAg -3' miRNA: 3'- -CUAUCUa---CaGGUugGCUGGCU-GCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 167125 | 0.67 | 0.995934 |
Target: 5'- -uUGGAUGUCCccaUGcCUGACGACGg -3' miRNA: 3'- cuAUCUACAGGuugGCuGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 200322 | 0.67 | 0.995271 |
Target: 5'- ---cGgcGUCCGccGCuCGACCGGCGAUg -3' miRNA: 3'- cuauCuaCAGGU--UG-GCUGGCUGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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