Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 69297 | 1.09 | 0.01338 |
Target: 5'- cGAUAGAUGUCCAACCGACCGACGACAc -3' miRNA: 3'- -CUAUCUACAGGUUGGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 48793 | 0.75 | 0.831015 |
Target: 5'- ---uGGUGUCCAggucccguccacgcaGCCGGCCGaACGGCAc -3' miRNA: 3'- cuauCUACAGGU---------------UGGCUGGC-UGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 18046 | 0.75 | 0.801583 |
Target: 5'- --aGGAUG-CCGACCGuCCGgACGACAa -3' miRNA: 3'- cuaUCUACaGGUUGGCuGGC-UGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 186148 | 0.74 | 0.881938 |
Target: 5'- --aGGAUGUCU--CCGuCCGACGACGu -3' miRNA: 3'- cuaUCUACAGGuuGGCuGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 223721 | 0.72 | 0.935743 |
Target: 5'- -cUAGccGUCuCAGCCuggGACCGGCGACGa -3' miRNA: 3'- cuAUCuaCAG-GUUGG---CUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 115138 | 0.72 | 0.940534 |
Target: 5'- --gAGAUGauggCCucggaaccGCCGGCCGGCGGCAc -3' miRNA: 3'- cuaUCUACa---GGu-------UGGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 7485 | 0.71 | 0.960986 |
Target: 5'- uGUGGAUGUCgAACCGGCuCGAgGGu- -3' miRNA: 3'- cUAUCUACAGgUUGGCUG-GCUgCUgu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 197012 | 0.71 | 0.953494 |
Target: 5'- --cGGAUGaCgAuCCGACCGACGACc -3' miRNA: 3'- cuaUCUACaGgUuGGCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 114110 | 0.71 | 0.960986 |
Target: 5'- --gAGcUG-CCGGCCGagGCCGACGACGg -3' miRNA: 3'- cuaUCuACaGGUUGGC--UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 65354 | 0.7 | 0.9644 |
Target: 5'- gGGUGGGUcgGUCgGAUCGACCugGGCGACGc -3' miRNA: 3'- -CUAUCUA--CAGgUUGGCUGG--CUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 25062 | 0.7 | 0.9644 |
Target: 5'- cGUAGccGUCUgacGAUCGACCGAuCGACAg -3' miRNA: 3'- cUAUCuaCAGG---UUGGCUGGCU-GCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 220631 | 0.7 | 0.9644 |
Target: 5'- ------cGUCCggUCGACCGuCGACAg -3' miRNA: 3'- cuaucuaCAGGuuGGCUGGCuGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 20013 | 0.7 | 0.970589 |
Target: 5'- uGGU-GAUGUUCGugCGACCGGC-ACAc -3' miRNA: 3'- -CUAuCUACAGGUugGCUGGCUGcUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 31616 | 0.69 | 0.978367 |
Target: 5'- cGUGGAcggcaaGUUCGugCGGCUGACGACGc -3' miRNA: 3'- cUAUCUa-----CAGGUugGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 166930 | 0.69 | 0.979939 |
Target: 5'- cGGUGGugagGUCCAacGCCcgucgcucgccggcGACCGGCGACu -3' miRNA: 3'- -CUAUCua--CAGGU--UGG--------------CUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 40700 | 0.69 | 0.980586 |
Target: 5'- uGGUGGAggauaGUUCGACCGGCaaGCGGCAu -3' miRNA: 3'- -CUAUCUa----CAGGUUGGCUGgcUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 195011 | 0.69 | 0.980586 |
Target: 5'- --gAGAUGUUCGACgcgccgccaaCGACgGGCGACGa -3' miRNA: 3'- cuaUCUACAGGUUG----------GCUGgCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 139895 | 0.69 | 0.980586 |
Target: 5'- --gAGGUGgCCGcggggccuCCGGCCGGCGGCGc -3' miRNA: 3'- cuaUCUACaGGUu-------GGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 90791 | 0.69 | 0.986227 |
Target: 5'- --cAGGuUGUCCAGCaGAUCGGCGugGg -3' miRNA: 3'- cuaUCU-ACAGGUUGgCUGGCUGCugU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 31374 | 0.69 | 0.986227 |
Target: 5'- --cGGA-GUCUGAUCGGCCGGCGGa- -3' miRNA: 3'- cuaUCUaCAGGUUGGCUGGCUGCUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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