miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 3' -51.2 NC_004065.1 + 69297 1.09 0.01338
Target:  5'- cGAUAGAUGUCCAACCGACCGACGACAc -3'
miRNA:   3'- -CUAUCUACAGGUUGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 18046 0.75 0.801583
Target:  5'- --aGGAUG-CCGACCGuCCGgACGACAa -3'
miRNA:   3'- cuaUCUACaGGUUGGCuGGC-UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 48793 0.75 0.831015
Target:  5'- ---uGGUGUCCAggucccguccacgcaGCCGGCCGaACGGCAc -3'
miRNA:   3'- cuauCUACAGGU---------------UGGCUGGC-UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 186148 0.74 0.881938
Target:  5'- --aGGAUGUCU--CCGuCCGACGACGu -3'
miRNA:   3'- cuaUCUACAGGuuGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 223721 0.72 0.935743
Target:  5'- -cUAGccGUCuCAGCCuggGACCGGCGACGa -3'
miRNA:   3'- cuAUCuaCAG-GUUGG---CUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 115138 0.72 0.940534
Target:  5'- --gAGAUGauggCCucggaaccGCCGGCCGGCGGCAc -3'
miRNA:   3'- cuaUCUACa---GGu-------UGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 197012 0.71 0.953494
Target:  5'- --cGGAUGaCgAuCCGACCGACGACc -3'
miRNA:   3'- cuaUCUACaGgUuGGCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 114110 0.71 0.960986
Target:  5'- --gAGcUG-CCGGCCGagGCCGACGACGg -3'
miRNA:   3'- cuaUCuACaGGUUGGC--UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 7485 0.71 0.960986
Target:  5'- uGUGGAUGUCgAACCGGCuCGAgGGu- -3'
miRNA:   3'- cUAUCUACAGgUUGGCUG-GCUgCUgu -5'
15864 3' -51.2 NC_004065.1 + 25062 0.7 0.9644
Target:  5'- cGUAGccGUCUgacGAUCGACCGAuCGACAg -3'
miRNA:   3'- cUAUCuaCAGG---UUGGCUGGCU-GCUGU- -5'
15864 3' -51.2 NC_004065.1 + 220631 0.7 0.9644
Target:  5'- ------cGUCCggUCGACCGuCGACAg -3'
miRNA:   3'- cuaucuaCAGGuuGGCUGGCuGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 65354 0.7 0.9644
Target:  5'- gGGUGGGUcgGUCgGAUCGACCugGGCGACGc -3'
miRNA:   3'- -CUAUCUA--CAGgUUGGCUGG--CUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 20013 0.7 0.970589
Target:  5'- uGGU-GAUGUUCGugCGACCGGC-ACAc -3'
miRNA:   3'- -CUAuCUACAGGUugGCUGGCUGcUGU- -5'
15864 3' -51.2 NC_004065.1 + 31616 0.69 0.978367
Target:  5'- cGUGGAcggcaaGUUCGugCGGCUGACGACGc -3'
miRNA:   3'- cUAUCUa-----CAGGUugGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 166930 0.69 0.979939
Target:  5'- cGGUGGugagGUCCAacGCCcgucgcucgccggcGACCGGCGACu -3'
miRNA:   3'- -CUAUCua--CAGGU--UGG--------------CUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 139895 0.69 0.980586
Target:  5'- --gAGGUGgCCGcggggccuCCGGCCGGCGGCGc -3'
miRNA:   3'- cuaUCUACaGGUu-------GGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 40700 0.69 0.980586
Target:  5'- uGGUGGAggauaGUUCGACCGGCaaGCGGCAu -3'
miRNA:   3'- -CUAUCUa----CAGGUUGGCUGgcUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 195011 0.69 0.980586
Target:  5'- --gAGAUGUUCGACgcgccgccaaCGACgGGCGACGa -3'
miRNA:   3'- cuaUCUACAGGUUG----------GCUGgCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 90791 0.69 0.986227
Target:  5'- --cAGGuUGUCCAGCaGAUCGGCGugGg -3'
miRNA:   3'- cuaUCU-ACAGGUUGgCUGGCUGCugU- -5'
15864 3' -51.2 NC_004065.1 + 31374 0.69 0.986227
Target:  5'- --cGGA-GUCUGAUCGGCCGGCGGa- -3'
miRNA:   3'- cuaUCUaCAGGUUGGCUGGCUGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.