Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 59725 | 0.68 | 0.987796 |
Target: 5'- ---cGAUGUUU-ACCGAcCCGGCGGCGa -3' miRNA: 3'- cuauCUACAGGuUGGCU-GGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 229642 | 0.68 | 0.987796 |
Target: 5'- ----cGUGcgCCAucCCGGCCGGCGGCAg -3' miRNA: 3'- cuaucUACa-GGUu-GGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 32456 | 0.68 | 0.989224 |
Target: 5'- --gAGGUGUacgCguGCCG-CCGACGGCAg -3' miRNA: 3'- cuaUCUACA---GguUGGCuGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 181213 | 0.68 | 0.990517 |
Target: 5'- gGAUGGugccGUUCGGCCGGCugCGugGACGg -3' miRNA: 3'- -CUAUCua--CAGGUUGGCUG--GCugCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 213208 | 0.68 | 0.990517 |
Target: 5'- --aAGAUGUaugaaCGACggCGGCCGugGACGa -3' miRNA: 3'- cuaUCUACAg----GUUG--GCUGGCugCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 49747 | 0.68 | 0.990517 |
Target: 5'- ---cGGUGUCCGAC--ACUGACGGCGc -3' miRNA: 3'- cuauCUACAGGUUGgcUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 202827 | 0.68 | 0.991574 |
Target: 5'- uAUAGAUGauuauucUCCGugugAUCGACaCGACGGCAg -3' miRNA: 3'- cUAUCUAC-------AGGU----UGGCUG-GCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 25967 | 0.68 | 0.991686 |
Target: 5'- -cUAGGgaUCC--CCGGCCGGCGGCAu -3' miRNA: 3'- cuAUCUacAGGuuGGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 183638 | 0.68 | 0.991686 |
Target: 5'- cGUGGAguaGUCCAgggACCGGCUGAgGugGc -3' miRNA: 3'- cUAUCUa--CAGGU---UGGCUGGCUgCugU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 211730 | 0.68 | 0.991686 |
Target: 5'- --cGGAccGUCCAGCCGcUCGACGAg- -3' miRNA: 3'- cuaUCUa-CAGGUUGGCuGGCUGCUgu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 33118 | 0.68 | 0.991686 |
Target: 5'- aGAUcGAUGUCCAugCagUCGACGGCc -3' miRNA: 3'- -CUAuCUACAGGUugGcuGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 196244 | 0.68 | 0.992737 |
Target: 5'- ----cAUGUCgGGCCGAaagcggucCCGGCGACAc -3' miRNA: 3'- cuaucUACAGgUUGGCU--------GGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 189700 | 0.68 | 0.992737 |
Target: 5'- --gGGAUGUCCcuCCa--CGACGACAc -3' miRNA: 3'- cuaUCUACAGGuuGGcugGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 22389 | 0.67 | 0.99368 |
Target: 5'- --aAGAUGUCCAugggaaagauGCCGAgCGccACGGCu -3' miRNA: 3'- cuaUCUACAGGU----------UGGCUgGC--UGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 208051 | 0.67 | 0.994522 |
Target: 5'- cGUGGcgGcCCucACCGuccuGCCGACGACGg -3' miRNA: 3'- cUAUCuaCaGGu-UGGC----UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 106242 | 0.67 | 0.994522 |
Target: 5'- cGUGGAcgccuggGUCCGACaggCGACCGGCGcGCGg -3' miRNA: 3'- cUAUCUa------CAGGUUG---GCUGGCUGC-UGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 200322 | 0.67 | 0.995271 |
Target: 5'- ---cGgcGUCCGccGCuCGACCGGCGAUg -3' miRNA: 3'- cuauCuaCAGGU--UG-GCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 123005 | 0.67 | 0.995271 |
Target: 5'- cGUGGGUGUCgGucuCCGGcgagcgugacguCCGACGGCGc -3' miRNA: 3'- cUAUCUACAGgUu--GGCU------------GGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 109418 | 0.67 | 0.995271 |
Target: 5'- --gAGGUGgcucuacaaCCAGCCGcGCUGGCGGCGc -3' miRNA: 3'- cuaUCUACa--------GGUUGGC-UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 167125 | 0.67 | 0.995934 |
Target: 5'- -uUGGAUGUCCccaUGcCUGACGACGg -3' miRNA: 3'- cuAUCUACAGGuugGCuGGCUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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