miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 3' -51.2 NC_004065.1 + 133391 0.67 0.995934
Target:  5'- --aAGAgcUCgCGACCG-CCGGCGACGa -3'
miRNA:   3'- cuaUCUacAG-GUUGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 183430 0.67 0.995934
Target:  5'- uGGUGGAgcacGaUCAugCGGCCGAcCGACAg -3'
miRNA:   3'- -CUAUCUa---CaGGUugGCUGGCU-GCUGU- -5'
15864 3' -51.2 NC_004065.1 + 123005 0.67 0.995271
Target:  5'- cGUGGGUGUCgGucuCCGGcgagcgugacguCCGACGGCGc -3'
miRNA:   3'- cUAUCUACAGgUu--GGCU------------GGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 109418 0.67 0.995271
Target:  5'- --gAGGUGgcucuacaaCCAGCCGcGCUGGCGGCGc -3'
miRNA:   3'- cuaUCUACa--------GGUUGGC-UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 200322 0.67 0.995271
Target:  5'- ---cGgcGUCCGccGCuCGACCGGCGAUg -3'
miRNA:   3'- cuauCuaCAGGU--UG-GCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 106242 0.67 0.994522
Target:  5'- cGUGGAcgccuggGUCCGACaggCGACCGGCGcGCGg -3'
miRNA:   3'- cUAUCUa------CAGGUUG---GCUGGCUGC-UGU- -5'
15864 3' -51.2 NC_004065.1 + 208051 0.67 0.994522
Target:  5'- cGUGGcgGcCCucACCGuccuGCCGACGACGg -3'
miRNA:   3'- cUAUCuaCaGGu-UGGC----UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 22389 0.67 0.99368
Target:  5'- --aAGAUGUCCAugggaaagauGCCGAgCGccACGGCu -3'
miRNA:   3'- cuaUCUACAGGU----------UGGCUgGC--UGCUGu -5'
15864 3' -51.2 NC_004065.1 + 189700 0.68 0.992737
Target:  5'- --gGGAUGUCCcuCCa--CGACGACAc -3'
miRNA:   3'- cuaUCUACAGGuuGGcugGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 196244 0.68 0.992737
Target:  5'- ----cAUGUCgGGCCGAaagcggucCCGGCGACAc -3'
miRNA:   3'- cuaucUACAGgUUGGCU--------GGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 25967 0.68 0.991686
Target:  5'- -cUAGGgaUCC--CCGGCCGGCGGCAu -3'
miRNA:   3'- cuAUCUacAGGuuGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 33118 0.68 0.991686
Target:  5'- aGAUcGAUGUCCAugCagUCGACGGCc -3'
miRNA:   3'- -CUAuCUACAGGUugGcuGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 183638 0.68 0.991686
Target:  5'- cGUGGAguaGUCCAgggACCGGCUGAgGugGc -3'
miRNA:   3'- cUAUCUa--CAGGU---UGGCUGGCUgCugU- -5'
15864 3' -51.2 NC_004065.1 + 211730 0.68 0.991686
Target:  5'- --cGGAccGUCCAGCCGcUCGACGAg- -3'
miRNA:   3'- cuaUCUa-CAGGUUGGCuGGCUGCUgu -5'
15864 3' -51.2 NC_004065.1 + 202827 0.68 0.991574
Target:  5'- uAUAGAUGauuauucUCCGugugAUCGACaCGACGGCAg -3'
miRNA:   3'- cUAUCUAC-------AGGU----UGGCUG-GCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 181213 0.68 0.990517
Target:  5'- gGAUGGugccGUUCGGCCGGCugCGugGACGg -3'
miRNA:   3'- -CUAUCua--CAGGUUGGCUG--GCugCUGU- -5'
15864 3' -51.2 NC_004065.1 + 213208 0.68 0.990517
Target:  5'- --aAGAUGUaugaaCGACggCGGCCGugGACGa -3'
miRNA:   3'- cuaUCUACAg----GUUG--GCUGGCugCUGU- -5'
15864 3' -51.2 NC_004065.1 + 49747 0.68 0.990517
Target:  5'- ---cGGUGUCCGAC--ACUGACGGCGc -3'
miRNA:   3'- cuauCUACAGGUUGgcUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 32456 0.68 0.989224
Target:  5'- --gAGGUGUacgCguGCCG-CCGACGGCAg -3'
miRNA:   3'- cuaUCUACA---GguUGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 229642 0.68 0.987796
Target:  5'- ----cGUGcgCCAucCCGGCCGGCGGCAg -3'
miRNA:   3'- cuaucUACa-GGUu-GGCUGGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.