miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 3' -51.2 NC_004065.1 + 59725 0.68 0.987796
Target:  5'- ---cGAUGUUU-ACCGAcCCGGCGGCGa -3'
miRNA:   3'- cuauCUACAGGuUGGCU-GGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 60528 0.66 0.997398
Target:  5'- gGAUGGggGUaCAGCCGACgaagccgccggaGACGACGg -3'
miRNA:   3'- -CUAUCuaCAgGUUGGCUGg-----------CUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 65354 0.7 0.9644
Target:  5'- gGGUGGGUcgGUCgGAUCGACCugGGCGACGc -3'
miRNA:   3'- -CUAUCUA--CAGgUUGGCUGG--CUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 68843 0.67 0.996294
Target:  5'- --cAGGUGcacgugcaacucgCCAGCUGACCGAgGACc -3'
miRNA:   3'- cuaUCUACa------------GGUUGGCUGGCUgCUGu -5'
15864 3' -51.2 NC_004065.1 + 69297 1.09 0.01338
Target:  5'- cGAUAGAUGUCCAACCGACCGACGACAc -3'
miRNA:   3'- -CUAUCUACAGGUUGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 70862 0.66 0.997874
Target:  5'- --gGGAUGUUCGcCCaGCUGGCGACc -3'
miRNA:   3'- cuaUCUACAGGUuGGcUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 73209 0.66 0.998213
Target:  5'- --aAGGUGUCCAGCauCGuGCCGAagGACGc -3'
miRNA:   3'- cuaUCUACAGGUUG--GC-UGGCUg-CUGU- -5'
15864 3' -51.2 NC_004065.1 + 83672 0.66 0.997874
Target:  5'- ---cGAUGUCCAGcCCGAucagggugUCGACGAg- -3'
miRNA:   3'- cuauCUACAGGUU-GGCU--------GGCUGCUgu -5'
15864 3' -51.2 NC_004065.1 + 90791 0.69 0.986227
Target:  5'- --cAGGuUGUCCAGCaGAUCGGCGugGg -3'
miRNA:   3'- cuaUCU-ACAGGUUGgCUGGCUGCugU- -5'
15864 3' -51.2 NC_004065.1 + 106242 0.67 0.994522
Target:  5'- cGUGGAcgccuggGUCCGACaggCGACCGGCGcGCGg -3'
miRNA:   3'- cUAUCUa------CAGGUUG---GCUGGCUGC-UGU- -5'
15864 3' -51.2 NC_004065.1 + 109418 0.67 0.995271
Target:  5'- --gAGGUGgcucuacaaCCAGCCGcGCUGGCGGCGc -3'
miRNA:   3'- cuaUCUACa--------GGUUGGC-UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 114110 0.71 0.960986
Target:  5'- --gAGcUG-CCGGCCGagGCCGACGACGg -3'
miRNA:   3'- cuaUCuACaGGUUGGC--UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 115138 0.72 0.940534
Target:  5'- --gAGAUGauggCCucggaaccGCCGGCCGGCGGCAc -3'
miRNA:   3'- cuaUCUACa---GGu-------UGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 115183 0.66 0.997874
Target:  5'- --aGGAUGgcccuggaUCCGGCCGugGCCGccGCGACGg -3'
miRNA:   3'- cuaUCUAC--------AGGUUGGC--UGGC--UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 121832 0.66 0.997033
Target:  5'- aGAUAGGgcccugcgacGUCCGcaccCCGACCcGCGACAu -3'
miRNA:   3'- -CUAUCUa---------CAGGUu---GGCUGGcUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 123005 0.67 0.995271
Target:  5'- cGUGGGUGUCgGucuCCGGcgagcgugacguCCGACGGCGc -3'
miRNA:   3'- cUAUCUACAGgUu--GGCU------------GGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 133391 0.67 0.995934
Target:  5'- --aAGAgcUCgCGACCG-CCGGCGACGa -3'
miRNA:   3'- cuaUCUacAG-GUUGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 139895 0.69 0.980586
Target:  5'- --gAGGUGgCCGcggggccuCCGGCCGGCGGCGc -3'
miRNA:   3'- cuaUCUACaGGUu-------GGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 164072 0.66 0.997483
Target:  5'- cGAUGGAacucggUGUUCGucuGCCGAUgguaCGGCGACGg -3'
miRNA:   3'- -CUAUCU------ACAGGU---UGGCUG----GCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 166930 0.69 0.979939
Target:  5'- cGGUGGugagGUCCAacGCCcgucgcucgccggcGACCGGCGACu -3'
miRNA:   3'- -CUAUCua--CAGGU--UGG--------------CUGGCUGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.