Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 167125 | 0.67 | 0.995934 |
Target: 5'- -uUGGAUGUCCccaUGcCUGACGACGg -3' miRNA: 3'- cuAUCUACAGGuugGCuGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 177382 | 0.66 | 0.998756 |
Target: 5'- --cGGAUGUgCAGCCGGuguucCCGACG-Cu -3' miRNA: 3'- cuaUCUACAgGUUGGCU-----GGCUGCuGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 181213 | 0.68 | 0.990517 |
Target: 5'- gGAUGGugccGUUCGGCCGGCugCGugGACGg -3' miRNA: 3'- -CUAUCua--CAGGUUGGCUG--GCugCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 183430 | 0.67 | 0.995934 |
Target: 5'- uGGUGGAgcacGaUCAugCGGCCGAcCGACAg -3' miRNA: 3'- -CUAUCUa---CaGGUugGCUGGCU-GCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 183638 | 0.68 | 0.991686 |
Target: 5'- cGUGGAguaGUCCAgggACCGGCUGAgGugGc -3' miRNA: 3'- cUAUCUa--CAGGU---UGGCUGGCUgCugU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 186148 | 0.74 | 0.881938 |
Target: 5'- --aGGAUGUCU--CCGuCCGACGACGu -3' miRNA: 3'- cuaUCUACAGGuuGGCuGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 189700 | 0.68 | 0.992737 |
Target: 5'- --gGGAUGUCCcuCCa--CGACGACAc -3' miRNA: 3'- cuaUCUACAGGuuGGcugGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 195011 | 0.69 | 0.980586 |
Target: 5'- --gAGAUGUUCGACgcgccgccaaCGACgGGCGACGa -3' miRNA: 3'- cuaUCUACAGGUUG----------GCUGgCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 196244 | 0.68 | 0.992737 |
Target: 5'- ----cAUGUCgGGCCGAaagcggucCCGGCGACAc -3' miRNA: 3'- cuaucUACAGgUUGGCU--------GGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 197012 | 0.71 | 0.953494 |
Target: 5'- --cGGAUGaCgAuCCGACCGACGACc -3' miRNA: 3'- cuaUCUACaGgUuGGCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 200322 | 0.67 | 0.995271 |
Target: 5'- ---cGgcGUCCGccGCuCGACCGGCGAUg -3' miRNA: 3'- cuauCuaCAGGU--UG-GCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 201862 | 0.66 | 0.998733 |
Target: 5'- aGAUGGcgGUUCAggucguaGCCGgucacgcagagGCCGAUGGCGu -3' miRNA: 3'- -CUAUCuaCAGGU-------UGGC-----------UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 202827 | 0.68 | 0.991574 |
Target: 5'- uAUAGAUGauuauucUCCGugugAUCGACaCGACGGCAg -3' miRNA: 3'- cUAUCUAC-------AGGU----UGGCUG-GCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 204750 | 0.66 | 0.997483 |
Target: 5'- --aGGGUGUacgcCCGACaGGCCGGgGACAg -3' miRNA: 3'- cuaUCUACA----GGUUGgCUGGCUgCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 208051 | 0.67 | 0.994522 |
Target: 5'- cGUGGcgGcCCucACCGuccuGCCGACGACGg -3' miRNA: 3'- cUAUCuaCaGGu-UGGC----UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 211730 | 0.68 | 0.991686 |
Target: 5'- --cGGAccGUCCAGCCGcUCGACGAg- -3' miRNA: 3'- cuaUCUa-CAGGUUGGCuGGCUGCUgu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 213208 | 0.68 | 0.990517 |
Target: 5'- --aAGAUGUaugaaCGACggCGGCCGugGACGa -3' miRNA: 3'- cuaUCUACAg----GUUG--GCUGGCugCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 220631 | 0.7 | 0.9644 |
Target: 5'- ------cGUCCggUCGACCGuCGACAg -3' miRNA: 3'- cuaucuaCAGGuuGGCUGGCuGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 223721 | 0.72 | 0.935743 |
Target: 5'- -cUAGccGUCuCAGCCuggGACCGGCGACGa -3' miRNA: 3'- cuAUCuaCAG-GUUGG---CUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 224376 | 0.66 | 0.998478 |
Target: 5'- --aGGAUGUCCAugUGGcggcguuCCGuCGGCGu -3' miRNA: 3'- cuaUCUACAGGUugGCU-------GGCuGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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