miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 3' -51.2 NC_004065.1 + 59725 0.68 0.987796
Target:  5'- ---cGAUGUUU-ACCGAcCCGGCGGCGa -3'
miRNA:   3'- cuauCUACAGGuUGGCU-GGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 57828 0.66 0.997874
Target:  5'- --gAGAUcagcGUCCcuccggagaCGACCGACGACGg -3'
miRNA:   3'- cuaUCUA----CAGGuug------GCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 49747 0.68 0.990517
Target:  5'- ---cGGUGUCCGAC--ACUGACGGCGc -3'
miRNA:   3'- cuauCUACAGGUUGgcUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 48793 0.75 0.831015
Target:  5'- ---uGGUGUCCAggucccguccacgcaGCCGGCCGaACGGCAc -3'
miRNA:   3'- cuauCUACAGGU---------------UGGCUGGC-UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 43280 0.66 0.998756
Target:  5'- --gGGAUGUCCGGCgUGG-CGACGaACAc -3'
miRNA:   3'- cuaUCUACAGGUUG-GCUgGCUGC-UGU- -5'
15864 3' -51.2 NC_004065.1 + 40700 0.69 0.980586
Target:  5'- uGGUGGAggauaGUUCGACCGGCaaGCGGCAu -3'
miRNA:   3'- -CUAUCUa----CAGGUUGGCUGgcUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 38001 0.67 0.996519
Target:  5'- ---cGGUGUgUCAACCGACCG-UGACc -3'
miRNA:   3'- cuauCUACA-GGUUGGCUGGCuGCUGu -5'
15864 3' -51.2 NC_004065.1 + 33118 0.68 0.991686
Target:  5'- aGAUcGAUGUCCAugCagUCGACGGCc -3'
miRNA:   3'- -CUAuCUACAGGUugGcuGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 32456 0.68 0.989224
Target:  5'- --gAGGUGUacgCguGCCG-CCGACGGCAg -3'
miRNA:   3'- cuaUCUACA---GguUGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 32078 0.66 0.998016
Target:  5'- --gAGAacUG-CCGcgaccgcuucgacucGCCGACCGACGAUg -3'
miRNA:   3'- cuaUCU--ACaGGU---------------UGGCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 31701 0.66 0.997483
Target:  5'- ---cGGUGcCCGAgCGuGCCGAUGACGg -3'
miRNA:   3'- cuauCUACaGGUUgGC-UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 31616 0.69 0.978367
Target:  5'- cGUGGAcggcaaGUUCGugCGGCUGACGACGc -3'
miRNA:   3'- cUAUCUa-----CAGGUugGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 31374 0.69 0.986227
Target:  5'- --cGGA-GUCUGAUCGGCCGGCGGa- -3'
miRNA:   3'- cuaUCUaCAGGUUGGCUGGCUGCUgu -5'
15864 3' -51.2 NC_004065.1 + 25967 0.68 0.991686
Target:  5'- -cUAGGgaUCC--CCGGCCGGCGGCAu -3'
miRNA:   3'- cuAUCUacAGGuuGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 25062 0.7 0.9644
Target:  5'- cGUAGccGUCUgacGAUCGACCGAuCGACAg -3'
miRNA:   3'- cUAUCuaCAGG---UUGGCUGGCU-GCUGU- -5'
15864 3' -51.2 NC_004065.1 + 22389 0.67 0.99368
Target:  5'- --aAGAUGUCCAugggaaagauGCCGAgCGccACGGCu -3'
miRNA:   3'- cuaUCUACAGGU----------UGGCUgGC--UGCUGu -5'
15864 3' -51.2 NC_004065.1 + 20013 0.7 0.970589
Target:  5'- uGGU-GAUGUUCGugCGACCGGC-ACAc -3'
miRNA:   3'- -CUAuCUACAGGUugGCUGGCUGcUGU- -5'
15864 3' -51.2 NC_004065.1 + 18046 0.75 0.801583
Target:  5'- --aGGAUG-CCGACCGuCCGgACGACAa -3'
miRNA:   3'- cuaUCUACaGGUUGGCuGGC-UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 12812 0.66 0.998213
Target:  5'- aGGUAGAauUCUguaAugUGACCGGCGGCu -3'
miRNA:   3'- -CUAUCUacAGG---UugGCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 7485 0.71 0.960986
Target:  5'- uGUGGAUGUCgAACCGGCuCGAgGGu- -3'
miRNA:   3'- cUAUCUACAGgUUGGCUG-GCUgCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.