Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 197012 | 0.71 | 0.953494 |
Target: 5'- --cGGAUGaCgAuCCGACCGACGACc -3' miRNA: 3'- cuaUCUACaGgUuGGCUGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 114110 | 0.71 | 0.960986 |
Target: 5'- --gAGcUG-CCGGCCGagGCCGACGACGg -3' miRNA: 3'- cuaUCuACaGGUUGGC--UGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 220631 | 0.7 | 0.9644 |
Target: 5'- ------cGUCCggUCGACCGuCGACAg -3' miRNA: 3'- cuaucuaCAGGuuGGCUGGCuGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 25062 | 0.7 | 0.9644 |
Target: 5'- cGUAGccGUCUgacGAUCGACCGAuCGACAg -3' miRNA: 3'- cUAUCuaCAGG---UUGGCUGGCU-GCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 166930 | 0.69 | 0.979939 |
Target: 5'- cGGUGGugagGUCCAacGCCcgucgcucgccggcGACCGGCGACu -3' miRNA: 3'- -CUAUCua--CAGGU--UGG--------------CUGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 31374 | 0.69 | 0.986227 |
Target: 5'- --cGGA-GUCUGAUCGGCCGGCGGa- -3' miRNA: 3'- cuaUCUaCAGGUUGGCUGGCUGCUgu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 211730 | 0.68 | 0.991686 |
Target: 5'- --cGGAccGUCCAGCCGcUCGACGAg- -3' miRNA: 3'- cuaUCUa-CAGGUUGGCuGGCUGCUgu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 33118 | 0.68 | 0.991686 |
Target: 5'- aGAUcGAUGUCCAugCagUCGACGGCc -3' miRNA: 3'- -CUAuCUACAGGUugGcuGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 213208 | 0.68 | 0.990517 |
Target: 5'- --aAGAUGUaugaaCGACggCGGCCGugGACGa -3' miRNA: 3'- cuaUCUACAg----GUUG--GCUGGCugCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 49747 | 0.68 | 0.990517 |
Target: 5'- ---cGGUGUCCGAC--ACUGACGGCGc -3' miRNA: 3'- cuauCUACAGGUUGgcUGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 229642 | 0.68 | 0.987796 |
Target: 5'- ----cGUGcgCCAucCCGGCCGGCGGCAg -3' miRNA: 3'- cuaucUACa-GGUu-GGCUGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 90791 | 0.69 | 0.986227 |
Target: 5'- --cAGGuUGUCCAGCaGAUCGGCGugGg -3' miRNA: 3'- cuaUCU-ACAGGUUGgCUGGCUGCugU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 139895 | 0.69 | 0.980586 |
Target: 5'- --gAGGUGgCCGcggggccuCCGGCCGGCGGCGc -3' miRNA: 3'- cuaUCUACaGGUu-------GGCUGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 31616 | 0.69 | 0.978367 |
Target: 5'- cGUGGAcggcaaGUUCGugCGGCUGACGACGc -3' miRNA: 3'- cUAUCUa-----CAGGUugGCUGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 20013 | 0.7 | 0.970589 |
Target: 5'- uGGU-GAUGUUCGugCGACCGGC-ACAc -3' miRNA: 3'- -CUAuCUACAGGUugGCUGGCUGcUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 65354 | 0.7 | 0.9644 |
Target: 5'- gGGUGGGUcgGUCgGAUCGACCugGGCGACGc -3' miRNA: 3'- -CUAUCUA--CAGgUUGGCUGG--CUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 7485 | 0.71 | 0.960986 |
Target: 5'- uGUGGAUGUCgAACCGGCuCGAgGGu- -3' miRNA: 3'- cUAUCUACAGgUUGGCUG-GCUgCUgu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 186148 | 0.74 | 0.881938 |
Target: 5'- --aGGAUGUCU--CCGuCCGACGACGu -3' miRNA: 3'- cuaUCUACAGGuuGGCuGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 18046 | 0.75 | 0.801583 |
Target: 5'- --aGGAUG-CCGACCGuCCGgACGACAa -3' miRNA: 3'- cuaUCUACaGGUUGGCuGGC-UGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 43280 | 0.66 | 0.998756 |
Target: 5'- --gGGAUGUCCGGCgUGG-CGACGaACAc -3' miRNA: 3'- cuaUCUACAGGUUG-GCUgGCUGC-UGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home