miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 3' -51.2 NC_004065.1 + 69297 1.09 0.01338
Target:  5'- cGAUAGAUGUCCAACCGACCGACGACAc -3'
miRNA:   3'- -CUAUCUACAGGUUGGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 106242 0.67 0.994522
Target:  5'- cGUGGAcgccuggGUCCGACaggCGACCGGCGcGCGg -3'
miRNA:   3'- cUAUCUa------CAGGUUG---GCUGGCUGC-UGU- -5'
15864 3' -51.2 NC_004065.1 + 167125 0.67 0.995934
Target:  5'- -uUGGAUGUCCccaUGcCUGACGACGg -3'
miRNA:   3'- cuAUCUACAGGuugGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 43280 0.66 0.998756
Target:  5'- --gGGAUGUCCGGCgUGG-CGACGaACAc -3'
miRNA:   3'- cuaUCUACAGGUUG-GCUgGCUGC-UGU- -5'
15864 3' -51.2 NC_004065.1 + 65354 0.7 0.9644
Target:  5'- gGGUGGGUcgGUCgGAUCGACCugGGCGACGc -3'
miRNA:   3'- -CUAUCUA--CAGgUUGGCUGG--CUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 20013 0.7 0.970589
Target:  5'- uGGU-GAUGUUCGugCGACCGGC-ACAc -3'
miRNA:   3'- -CUAuCUACAGGUugGCUGGCUGcUGU- -5'
15864 3' -51.2 NC_004065.1 + 139895 0.69 0.980586
Target:  5'- --gAGGUGgCCGcggggccuCCGGCCGGCGGCGc -3'
miRNA:   3'- cuaUCUACaGGUu-------GGCUGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 195011 0.69 0.980586
Target:  5'- --gAGAUGUUCGACgcgccgccaaCGACgGGCGACGa -3'
miRNA:   3'- cuaUCUACAGGUUG----------GCUGgCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 32456 0.68 0.989224
Target:  5'- --gAGGUGUacgCguGCCG-CCGACGGCAg -3'
miRNA:   3'- cuaUCUACA---GguUGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 208051 0.67 0.994522
Target:  5'- cGUGGcgGcCCucACCGuccuGCCGACGACGg -3'
miRNA:   3'- cUAUCuaCaGGu-UGGC----UGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 202827 0.68 0.991574
Target:  5'- uAUAGAUGauuauucUCCGugugAUCGACaCGACGGCAg -3'
miRNA:   3'- cUAUCUAC-------AGGU----UGGCUG-GCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 59725 0.68 0.987796
Target:  5'- ---cGAUGUUU-ACCGAcCCGGCGGCGa -3'
miRNA:   3'- cuauCUACAGGuUGGCU-GGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 18046 0.75 0.801583
Target:  5'- --aGGAUG-CCGACCGuCCGgACGACAa -3'
miRNA:   3'- cuaUCUACaGGUUGGCuGGC-UGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 183638 0.68 0.991686
Target:  5'- cGUGGAguaGUCCAgggACCGGCUGAgGugGc -3'
miRNA:   3'- cUAUCUa--CAGGU---UGGCUGGCUgCugU- -5'
15864 3' -51.2 NC_004065.1 + 186148 0.74 0.881938
Target:  5'- --aGGAUGUCU--CCGuCCGACGACGu -3'
miRNA:   3'- cuaUCUACAGGuuGGCuGGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 40700 0.69 0.980586
Target:  5'- uGGUGGAggauaGUUCGACCGGCaaGCGGCAu -3'
miRNA:   3'- -CUAUCUa----CAGGUUGGCUGgcUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 189700 0.68 0.992737
Target:  5'- --gGGAUGUCCcuCCa--CGACGACAc -3'
miRNA:   3'- cuaUCUACAGGuuGGcugGCUGCUGU- -5'
15864 3' -51.2 NC_004065.1 + 200322 0.67 0.995271
Target:  5'- ---cGgcGUCCGccGCuCGACCGGCGAUg -3'
miRNA:   3'- cuauCuaCAGGU--UG-GCUGGCUGCUGu -5'
15864 3' -51.2 NC_004065.1 + 7485 0.71 0.960986
Target:  5'- uGUGGAUGUCgAACCGGCuCGAgGGu- -3'
miRNA:   3'- cUAUCUACAGgUUGGCUG-GCUgCUgu -5'
15864 3' -51.2 NC_004065.1 + 31616 0.69 0.978367
Target:  5'- cGUGGAcggcaaGUUCGugCGGCUGACGACGc -3'
miRNA:   3'- cUAUCUa-----CAGGUugGCUGGCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.