Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 2539 | 0.66 | 0.998505 |
Target: 5'- --cGGcugGUCCGAUCGGUCGACGGCc -3' miRNA: 3'- cuaUCua-CAGGUUGGCUGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 167125 | 0.67 | 0.995934 |
Target: 5'- -uUGGAUGUCCccaUGcCUGACGACGg -3' miRNA: 3'- cuAUCUACAGGuugGCuGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 32456 | 0.68 | 0.989224 |
Target: 5'- --gAGGUGUacgCguGCCG-CCGACGGCAg -3' miRNA: 3'- cuaUCUACA---GguUGGCuGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 204750 | 0.66 | 0.997483 |
Target: 5'- --aGGGUGUacgcCCGACaGGCCGGgGACAg -3' miRNA: 3'- cuaUCUACA----GGUUGgCUGGCUgCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 43280 | 0.66 | 0.998756 |
Target: 5'- --gGGAUGUCCGGCgUGG-CGACGaACAc -3' miRNA: 3'- cuaUCUACAGGUUG-GCUgGCUGC-UGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 12812 | 0.66 | 0.998213 |
Target: 5'- aGGUAGAauUCUguaAugUGACCGGCGGCu -3' miRNA: 3'- -CUAUCUacAGG---UugGCUGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 59725 | 0.68 | 0.987796 |
Target: 5'- ---cGAUGUUU-ACCGAcCCGGCGGCGa -3' miRNA: 3'- cuauCUACAGGuUGGCU-GGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 40700 | 0.69 | 0.980586 |
Target: 5'- uGGUGGAggauaGUUCGACCGGCaaGCGGCAu -3' miRNA: 3'- -CUAUCUa----CAGGUUGGCUGgcUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 183430 | 0.67 | 0.995934 |
Target: 5'- uGGUGGAgcacGaUCAugCGGCCGAcCGACAg -3' miRNA: 3'- -CUAUCUa---CaGGUugGCUGGCU-GCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 25062 | 0.7 | 0.9644 |
Target: 5'- cGUAGccGUCUgacGAUCGACCGAuCGACAg -3' miRNA: 3'- cUAUCuaCAGG---UUGGCUGGCU-GCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 224376 | 0.66 | 0.998478 |
Target: 5'- --aGGAUGUCCAugUGGcggcguuCCGuCGGCGu -3' miRNA: 3'- cuaUCUACAGGUugGCU-------GGCuGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 211730 | 0.68 | 0.991686 |
Target: 5'- --cGGAccGUCCAGCCGcUCGACGAg- -3' miRNA: 3'- cuaUCUa-CAGGUUGGCuGGCUGCUgu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 33118 | 0.68 | 0.991686 |
Target: 5'- aGAUcGAUGUCCAugCagUCGACGGCc -3' miRNA: 3'- -CUAuCUACAGGUugGcuGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 213208 | 0.68 | 0.990517 |
Target: 5'- --aAGAUGUaugaaCGACggCGGCCGugGACGa -3' miRNA: 3'- cuaUCUACAg----GUUG--GCUGGCugCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 31701 | 0.66 | 0.997483 |
Target: 5'- ---cGGUGcCCGAgCGuGCCGAUGACGg -3' miRNA: 3'- cuauCUACaGGUUgGC-UGGCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 164072 | 0.66 | 0.997483 |
Target: 5'- cGAUGGAacucggUGUUCGucuGCCGAUgguaCGGCGACGg -3' miRNA: 3'- -CUAUCU------ACAGGU---UGGCUG----GCUGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 83672 | 0.66 | 0.997874 |
Target: 5'- ---cGAUGUCCAGcCCGAucagggugUCGACGAg- -3' miRNA: 3'- cuauCUACAGGUU-GGCU--------GGCUGCUgu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 70862 | 0.66 | 0.997874 |
Target: 5'- --gGGAUGUUCGcCCaGCUGGCGACc -3' miRNA: 3'- cuaUCUACAGGUuGGcUGGCUGCUGu -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 115183 | 0.66 | 0.997874 |
Target: 5'- --aGGAUGgcccuggaUCCGGCCGugGCCGccGCGACGg -3' miRNA: 3'- cuaUCUAC--------AGGUUGGC--UGGC--UGCUGU- -5' |
|||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 73209 | 0.66 | 0.998213 |
Target: 5'- --aAGGUGUCCAGCauCGuGCCGAagGACGc -3' miRNA: 3'- cuaUCUACAGGUUG--GC-UGGCUg-CUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home