Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15864 | 3' | -51.2 | NC_004065.1 | + | 220631 | 0.7 | 0.9644 |
Target: 5'- ------cGUCCggUCGACCGuCGACAg -3' miRNA: 3'- cuaucuaCAGGuuGGCUGGCuGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 114110 | 0.71 | 0.960986 |
Target: 5'- --gAGcUG-CCGGCCGagGCCGACGACGg -3' miRNA: 3'- cuaUCuACaGGUUGGC--UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 197012 | 0.71 | 0.953494 |
Target: 5'- --cGGAUGaCgAuCCGACCGACGACc -3' miRNA: 3'- cuaUCUACaGgUuGGCUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 115138 | 0.72 | 0.940534 |
Target: 5'- --gAGAUGauggCCucggaaccGCCGGCCGGCGGCAc -3' miRNA: 3'- cuaUCUACa---GGu-------UGGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 223721 | 0.72 | 0.935743 |
Target: 5'- -cUAGccGUCuCAGCCuggGACCGGCGACGa -3' miRNA: 3'- cuAUCuaCAG-GUUGG---CUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 211730 | 0.68 | 0.991686 |
Target: 5'- --cGGAccGUCCAGCCGcUCGACGAg- -3' miRNA: 3'- cuaUCUa-CAGGUUGGCuGGCUGCUgu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 25967 | 0.68 | 0.991686 |
Target: 5'- -cUAGGgaUCC--CCGGCCGGCGGCAu -3' miRNA: 3'- cuAUCUacAGGuuGGCUGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 196244 | 0.68 | 0.992737 |
Target: 5'- ----cAUGUCgGGCCGAaagcggucCCGGCGACAc -3' miRNA: 3'- cuaucUACAGgUUGGCU--------GGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 224376 | 0.66 | 0.998478 |
Target: 5'- --aGGAUGUCCAugUGGcggcguuCCGuCGGCGu -3' miRNA: 3'- cuaUCUACAGGUugGCU-------GGCuGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 73209 | 0.66 | 0.998213 |
Target: 5'- --aAGGUGUCCAGCauCGuGCCGAagGACGc -3' miRNA: 3'- cuaUCUACAGGUUG--GC-UGGCUg-CUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 115183 | 0.66 | 0.997874 |
Target: 5'- --aGGAUGgcccuggaUCCGGCCGugGCCGccGCGACGg -3' miRNA: 3'- cuaUCUAC--------AGGUUGGC--UGGC--UGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 70862 | 0.66 | 0.997874 |
Target: 5'- --gGGAUGUUCGcCCaGCUGGCGACc -3' miRNA: 3'- cuaUCUACAGGUuGGcUGGCUGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 83672 | 0.66 | 0.997874 |
Target: 5'- ---cGAUGUCCAGcCCGAucagggugUCGACGAg- -3' miRNA: 3'- cuauCUACAGGUU-GGCU--------GGCUGCUgu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 164072 | 0.66 | 0.997483 |
Target: 5'- cGAUGGAacucggUGUUCGucuGCCGAUgguaCGGCGACGg -3' miRNA: 3'- -CUAUCU------ACAGGU---UGGCUG----GCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 60528 | 0.66 | 0.997398 |
Target: 5'- gGAUGGggGUaCAGCCGACgaagccgccggaGACGACGg -3' miRNA: 3'- -CUAUCuaCAgGUUGGCUGg-----------CUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 38001 | 0.67 | 0.996519 |
Target: 5'- ---cGGUGUgUCAACCGACCG-UGACc -3' miRNA: 3'- cuauCUACA-GGUUGGCUGGCuGCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 68843 | 0.67 | 0.996294 |
Target: 5'- --cAGGUGcacgugcaacucgCCAGCUGACCGAgGACc -3' miRNA: 3'- cuaUCUACa------------GGUUGGCUGGCUgCUGu -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 123005 | 0.67 | 0.995271 |
Target: 5'- cGUGGGUGUCgGucuCCGGcgagcgugacguCCGACGGCGc -3' miRNA: 3'- cUAUCUACAGgUu--GGCU------------GGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 109418 | 0.67 | 0.995271 |
Target: 5'- --gAGGUGgcucuacaaCCAGCCGcGCUGGCGGCGc -3' miRNA: 3'- cuaUCUACa--------GGUUGGC-UGGCUGCUGU- -5' |
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15864 | 3' | -51.2 | NC_004065.1 | + | 22389 | 0.67 | 0.99368 |
Target: 5'- --aAGAUGUCCAugggaaagauGCCGAgCGccACGGCu -3' miRNA: 3'- cuaUCUACAGGU----------UGGCUgGC--UGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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