miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 5' -55.4 NC_004065.1 + 106932 0.66 0.976922
Target:  5'- cCGUGUUgacauUCGGCGGGAuGCgaGUCg -3'
miRNA:   3'- -GCACAAgc---AGCCGCCCUuUGggCAGa -5'
15864 5' -55.4 NC_004065.1 + 154010 0.66 0.976922
Target:  5'- uCGUGUUCG-CGGCGGcGGcggcGACgUUGUCa -3'
miRNA:   3'- -GCACAAGCaGCCGCC-CU----UUG-GGCAGa -5'
15864 5' -55.4 NC_004065.1 + 36149 0.66 0.976922
Target:  5'- uGUGUUgGuggaUCGGCGGGAGucGCCgCGg-- -3'
miRNA:   3'- gCACAAgC----AGCCGCCCUU--UGG-GCaga -5'
15864 5' -55.4 NC_004065.1 + 211665 0.66 0.974503
Target:  5'- --cGUUCGUgCGGaucguucgaGGGGGAgCCGUCg -3'
miRNA:   3'- gcaCAAGCA-GCCg--------CCCUUUgGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 211525 0.66 0.974503
Target:  5'- aGgg-UCGUCGGUGGcGAcgacgcCCCGUCg -3'
miRNA:   3'- gCacaAGCAGCCGCC-CUuu----GGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 219827 0.66 0.971905
Target:  5'- gGUGUUCGaaaCGGUGGuaucgguGGCCUGUCg -3'
miRNA:   3'- gCACAAGCa--GCCGCCcu-----UUGGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 111608 0.66 0.969121
Target:  5'- cCGUGUUCGcCGGCGaGAucgauCCCGa-- -3'
miRNA:   3'- -GCACAAGCaGCCGCcCUuu---GGGCaga -5'
15864 5' -55.4 NC_004065.1 + 146625 0.66 0.969121
Target:  5'- cCGUG-UCuUCGGUGGuGAACgCCGUCa -3'
miRNA:   3'- -GCACaAGcAGCCGCCcUUUG-GGCAGa -5'
15864 5' -55.4 NC_004065.1 + 68323 0.66 0.965216
Target:  5'- gGUG-UCGUCGuggcuGCGGGAGcugcugcagcagcuGCCCGUg- -3'
miRNA:   3'- gCACaAGCAGC-----CGCCCUU--------------UGGGCAga -5'
15864 5' -55.4 NC_004065.1 + 146756 0.67 0.959603
Target:  5'- uGUGggCGUCGGCGGcGucuGCCgcaucuccauCGUCg -3'
miRNA:   3'- gCACaaGCAGCCGCC-Cuu-UGG----------GCAGa -5'
15864 5' -55.4 NC_004065.1 + 96662 0.67 0.956025
Target:  5'- uCGg---CGUCGGCGGGcucGCCCGa-- -3'
miRNA:   3'- -GCacaaGCAGCCGCCCuu-UGGGCaga -5'
15864 5' -55.4 NC_004065.1 + 103746 0.67 0.956025
Target:  5'- gCGUcgGUUCGcgCGGCGGGGccuccggaCCGUCg -3'
miRNA:   3'- -GCA--CAAGCa-GCCGCCCUuug-----GGCAGa -5'
15864 5' -55.4 NC_004065.1 + 168473 0.67 0.954536
Target:  5'- uCGUcc-CGUCGGUGGGGGuuaagaucuucguCCCGUCg -3'
miRNA:   3'- -GCAcaaGCAGCCGCCCUUu------------GGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 142026 0.67 0.952238
Target:  5'- aCGUcgUCGUcgacgaCGGUGGGGGAUUCGUCa -3'
miRNA:   3'- -GCAcaAGCA------GCCGCCCUUUGGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 202741 0.67 0.948237
Target:  5'- aCGcg-UCGUCGGCGGcGccGCCgGUCUc -3'
miRNA:   3'- -GCacaAGCAGCCGCC-CuuUGGgCAGA- -5'
15864 5' -55.4 NC_004065.1 + 75587 0.68 0.939586
Target:  5'- uCGUG-UCGcCGGCGGGggGaggCCG-CUg -3'
miRNA:   3'- -GCACaAGCaGCCGCCCuuUg--GGCaGA- -5'
15864 5' -55.4 NC_004065.1 + 57444 0.68 0.929053
Target:  5'- uGUGUcucuuuucuuagCGUCGGCGGGccgauCCCGUg- -3'
miRNA:   3'- gCACAa-----------GCAGCCGCCCuuu--GGGCAga -5'
15864 5' -55.4 NC_004065.1 + 169246 0.69 0.902356
Target:  5'- -aUGUUCGcgaGGCGGGAGGCCgCGg-- -3'
miRNA:   3'- gcACAAGCag-CCGCCCUUUGG-GCaga -5'
15864 5' -55.4 NC_004065.1 + 9451 0.69 0.901134
Target:  5'- aCGUGgcgaaacacgucUCGUUGGCGaGGAGACCgGcUCUa -3'
miRNA:   3'- -GCACa-----------AGCAGCCGC-CCUUUGGgC-AGA- -5'
15864 5' -55.4 NC_004065.1 + 22287 0.69 0.893621
Target:  5'- uGUGUcauucgaUCGUCGGUGGGGuggacggugacguuGAcgacCCCGUCg -3'
miRNA:   3'- gCACA-------AGCAGCCGCCCU--------------UU----GGGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.