Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15864 | 5' | -55.4 | NC_004065.1 | + | 102048 | 0.7 | 0.883129 |
Target: 5'- uCGggGUcUCGUCGGCGG---ACCUGUCUg -3' miRNA: 3'- -GCa-CA-AGCAGCCGCCcuuUGGGCAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 18169 | 0.7 | 0.876302 |
Target: 5'- cCGUGUggagCGcCGGcCGGGAcuCCCGUg- -3' miRNA: 3'- -GCACAa---GCaGCC-GCCCUuuGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 28574 | 0.7 | 0.862046 |
Target: 5'- uCGUGcgCGUCGaCGGGAcACCCucGUCUu -3' miRNA: 3'- -GCACaaGCAGCcGCCCUuUGGG--CAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 6515 | 0.7 | 0.857617 |
Target: 5'- aCGUGUUC-UCGGUGgaaucuaaggcuaacGGAugcGACCCGUCa -3' miRNA: 3'- -GCACAAGcAGCCGC---------------CCU---UUGGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 91368 | 0.7 | 0.854626 |
Target: 5'- cCGUGUaC-UCGGCGGGGgcgauaccuAGCUCGUCg -3' miRNA: 3'- -GCACAaGcAGCCGCCCU---------UUGGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 167642 | 0.72 | 0.78908 |
Target: 5'- -aUGcUCGUCGGCGGGAcGgCCGUa- -3' miRNA: 3'- gcACaAGCAGCCGCCCUuUgGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 139339 | 0.72 | 0.762132 |
Target: 5'- uCGUGUUCGUgcccagcgcCGGCaaGGGGgccaacagcAACCCGUCg -3' miRNA: 3'- -GCACAAGCA---------GCCG--CCCU---------UUGGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 177393 | 0.72 | 0.762132 |
Target: 5'- gGUGUUCGUCGGUGGc-GACCUGa-- -3' miRNA: 3'- gCACAAGCAGCCGCCcuUUGGGCaga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 174447 | 0.72 | 0.762132 |
Target: 5'- uCGUGUcCGaCGGCGGGA---CCGUCUa -3' miRNA: 3'- -GCACAaGCaGCCGCCCUuugGGCAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 81990 | 0.73 | 0.715189 |
Target: 5'- aCGUuUUCGgCGGCGGGGAaggcGCCCGUg- -3' miRNA: 3'- -GCAcAAGCaGCCGCCCUU----UGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 224905 | 0.75 | 0.617355 |
Target: 5'- gGUG-UCGUCGGUGagcGGAGGCCCGUg- -3' miRNA: 3'- gCACaAGCAGCCGC---CCUUUGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 69331 | 1.07 | 0.008107 |
Target: 5'- uCGUGUUCGUCGGCGGGAAACCCGUCUu -3' miRNA: 3'- -GCACAAGCAGCCGCCCUUUGGGCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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