miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 5' -55.4 NC_004065.1 + 146756 0.67 0.959603
Target:  5'- uGUGggCGUCGGCGGcGucuGCCgcaucuccauCGUCg -3'
miRNA:   3'- gCACaaGCAGCCGCC-Cuu-UGG----------GCAGa -5'
15864 5' -55.4 NC_004065.1 + 154010 0.66 0.976922
Target:  5'- uCGUGUUCG-CGGCGGcGGcggcGACgUUGUCa -3'
miRNA:   3'- -GCACAAGCaGCCGCC-CU----UUG-GGCAGa -5'
15864 5' -55.4 NC_004065.1 + 167642 0.72 0.78908
Target:  5'- -aUGcUCGUCGGCGGGAcGgCCGUa- -3'
miRNA:   3'- gcACaAGCAGCCGCCCUuUgGGCAga -5'
15864 5' -55.4 NC_004065.1 + 168473 0.67 0.954536
Target:  5'- uCGUcc-CGUCGGUGGGGGuuaagaucuucguCCCGUCg -3'
miRNA:   3'- -GCAcaaGCAGCCGCCCUUu------------GGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 169246 0.69 0.902356
Target:  5'- -aUGUUCGcgaGGCGGGAGGCCgCGg-- -3'
miRNA:   3'- gcACAAGCag-CCGCCCUUUGG-GCaga -5'
15864 5' -55.4 NC_004065.1 + 174447 0.72 0.762132
Target:  5'- uCGUGUcCGaCGGCGGGA---CCGUCUa -3'
miRNA:   3'- -GCACAaGCaGCCGCCCUuugGGCAGA- -5'
15864 5' -55.4 NC_004065.1 + 177393 0.72 0.762132
Target:  5'- gGUGUUCGUCGGUGGc-GACCUGa-- -3'
miRNA:   3'- gCACAAGCAGCCGCCcuUUGGGCaga -5'
15864 5' -55.4 NC_004065.1 + 202741 0.67 0.948237
Target:  5'- aCGcg-UCGUCGGCGGcGccGCCgGUCUc -3'
miRNA:   3'- -GCacaAGCAGCCGCC-CuuUGGgCAGA- -5'
15864 5' -55.4 NC_004065.1 + 211525 0.66 0.974503
Target:  5'- aGgg-UCGUCGGUGGcGAcgacgcCCCGUCg -3'
miRNA:   3'- gCacaAGCAGCCGCC-CUuu----GGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 211665 0.66 0.974503
Target:  5'- --cGUUCGUgCGGaucguucgaGGGGGAgCCGUCg -3'
miRNA:   3'- gcaCAAGCA-GCCg--------CCCUUUgGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 219827 0.66 0.971905
Target:  5'- gGUGUUCGaaaCGGUGGuaucgguGGCCUGUCg -3'
miRNA:   3'- gCACAAGCa--GCCGCCcu-----UUGGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 224905 0.75 0.617355
Target:  5'- gGUG-UCGUCGGUGagcGGAGGCCCGUg- -3'
miRNA:   3'- gCACaAGCAGCCGC---CCUUUGGGCAga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.