Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15864 | 5' | -55.4 | NC_004065.1 | + | 91368 | 0.7 | 0.854626 |
Target: 5'- cCGUGUaC-UCGGCGGGGgcgauaccuAGCUCGUCg -3' miRNA: 3'- -GCACAaGcAGCCGCCCU---------UUGGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 81990 | 0.73 | 0.715189 |
Target: 5'- aCGUuUUCGgCGGCGGGGAaggcGCCCGUg- -3' miRNA: 3'- -GCAcAAGCaGCCGCCCUU----UGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 75587 | 0.68 | 0.939586 |
Target: 5'- uCGUG-UCGcCGGCGGGggGaggCCG-CUg -3' miRNA: 3'- -GCACaAGCaGCCGCCCuuUg--GGCaGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 69331 | 1.07 | 0.008107 |
Target: 5'- uCGUGUUCGUCGGCGGGAAACCCGUCUu -3' miRNA: 3'- -GCACAAGCAGCCGCCCUUUGGGCAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 68323 | 0.66 | 0.965216 |
Target: 5'- gGUG-UCGUCGuggcuGCGGGAGcugcugcagcagcuGCCCGUg- -3' miRNA: 3'- gCACaAGCAGC-----CGCCCUU--------------UGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 57444 | 0.68 | 0.929053 |
Target: 5'- uGUGUcucuuuucuuagCGUCGGCGGGccgauCCCGUg- -3' miRNA: 3'- gCACAa-----------GCAGCCGCCCuuu--GGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 36149 | 0.66 | 0.976922 |
Target: 5'- uGUGUUgGuggaUCGGCGGGAGucGCCgCGg-- -3' miRNA: 3'- gCACAAgC----AGCCGCCCUU--UGG-GCaga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 28574 | 0.7 | 0.862046 |
Target: 5'- uCGUGcgCGUCGaCGGGAcACCCucGUCUu -3' miRNA: 3'- -GCACaaGCAGCcGCCCUuUGGG--CAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 22287 | 0.69 | 0.893621 |
Target: 5'- uGUGUcauucgaUCGUCGGUGGGGuggacggugacguuGAcgacCCCGUCg -3' miRNA: 3'- gCACA-------AGCAGCCGCCCU--------------UU----GGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 18169 | 0.7 | 0.876302 |
Target: 5'- cCGUGUggagCGcCGGcCGGGAcuCCCGUg- -3' miRNA: 3'- -GCACAa---GCaGCC-GCCCUuuGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 9451 | 0.69 | 0.901134 |
Target: 5'- aCGUGgcgaaacacgucUCGUUGGCGaGGAGACCgGcUCUa -3' miRNA: 3'- -GCACa-----------AGCAGCCGC-CCUUUGGgC-AGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 6515 | 0.7 | 0.857617 |
Target: 5'- aCGUGUUC-UCGGUGgaaucuaaggcuaacGGAugcGACCCGUCa -3' miRNA: 3'- -GCACAAGcAGCCGC---------------CCU---UUGGGCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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