Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15864 | 5' | -55.4 | NC_004065.1 | + | 146625 | 0.66 | 0.969121 |
Target: 5'- cCGUG-UCuUCGGUGGuGAACgCCGUCa -3' miRNA: 3'- -GCACaAGcAGCCGCCcUUUG-GGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 219827 | 0.66 | 0.971905 |
Target: 5'- gGUGUUCGaaaCGGUGGuaucgguGGCCUGUCg -3' miRNA: 3'- gCACAAGCa--GCCGCCcu-----UUGGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 211525 | 0.66 | 0.974503 |
Target: 5'- aGgg-UCGUCGGUGGcGAcgacgcCCCGUCg -3' miRNA: 3'- gCacaAGCAGCCGCC-CUuu----GGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 169246 | 0.69 | 0.902356 |
Target: 5'- -aUGUUCGcgaGGCGGGAGGCCgCGg-- -3' miRNA: 3'- gcACAAGCag-CCGCCCUUUGG-GCaga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 9451 | 0.69 | 0.901134 |
Target: 5'- aCGUGgcgaaacacgucUCGUUGGCGaGGAGACCgGcUCUa -3' miRNA: 3'- -GCACa-----------AGCAGCCGC-CCUUUGGgC-AGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 22287 | 0.69 | 0.893621 |
Target: 5'- uGUGUcauucgaUCGUCGGUGGGGuggacggugacguuGAcgacCCCGUCg -3' miRNA: 3'- gCACA-------AGCAGCCGCCCU--------------UU----GGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 18169 | 0.7 | 0.876302 |
Target: 5'- cCGUGUggagCGcCGGcCGGGAcuCCCGUg- -3' miRNA: 3'- -GCACAa---GCaGCC-GCCCUuuGGGCAga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 139339 | 0.72 | 0.762132 |
Target: 5'- uCGUGUUCGUgcccagcgcCGGCaaGGGGgccaacagcAACCCGUCg -3' miRNA: 3'- -GCACAAGCA---------GCCG--CCCU---------UUGGGCAGa -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 177393 | 0.72 | 0.762132 |
Target: 5'- gGUGUUCGUCGGUGGc-GACCUGa-- -3' miRNA: 3'- gCACAAGCAGCCGCCcuUUGGGCaga -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 174447 | 0.72 | 0.762132 |
Target: 5'- uCGUGUcCGaCGGCGGGA---CCGUCUa -3' miRNA: 3'- -GCACAaGCaGCCGCCCUuugGGCAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 69331 | 1.07 | 0.008107 |
Target: 5'- uCGUGUUCGUCGGCGGGAAACCCGUCUu -3' miRNA: 3'- -GCACAAGCAGCCGCCCUUUGGGCAGA- -5' |
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15864 | 5' | -55.4 | NC_004065.1 | + | 211665 | 0.66 | 0.974503 |
Target: 5'- --cGUUCGUgCGGaucguucgaGGGGGAgCCGUCg -3' miRNA: 3'- gcaCAAGCA-GCCg--------CCCUUUgGGCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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