miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15864 5' -55.4 NC_004065.1 + 6515 0.7 0.857617
Target:  5'- aCGUGUUC-UCGGUGgaaucuaaggcuaacGGAugcGACCCGUCa -3'
miRNA:   3'- -GCACAAGcAGCCGC---------------CCU---UUGGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 28574 0.7 0.862046
Target:  5'- uCGUGcgCGUCGaCGGGAcACCCucGUCUu -3'
miRNA:   3'- -GCACaaGCAGCcGCCCUuUGGG--CAGA- -5'
15864 5' -55.4 NC_004065.1 + 102048 0.7 0.883129
Target:  5'- uCGggGUcUCGUCGGCGG---ACCUGUCUg -3'
miRNA:   3'- -GCa-CA-AGCAGCCGCCcuuUGGGCAGA- -5'
15864 5' -55.4 NC_004065.1 + 75587 0.68 0.939586
Target:  5'- uCGUG-UCGcCGGCGGGggGaggCCG-CUg -3'
miRNA:   3'- -GCACaAGCaGCCGCCCuuUg--GGCaGA- -5'
15864 5' -55.4 NC_004065.1 + 142026 0.67 0.952238
Target:  5'- aCGUcgUCGUcgacgaCGGUGGGGGAUUCGUCa -3'
miRNA:   3'- -GCAcaAGCA------GCCGCCCUUUGGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 168473 0.67 0.954536
Target:  5'- uCGUcc-CGUCGGUGGGGGuuaagaucuucguCCCGUCg -3'
miRNA:   3'- -GCAcaaGCAGCCGCCCUUu------------GGGCAGa -5'
15864 5' -55.4 NC_004065.1 + 103746 0.67 0.956025
Target:  5'- gCGUcgGUUCGcgCGGCGGGGccuccggaCCGUCg -3'
miRNA:   3'- -GCA--CAAGCa-GCCGCCCUuug-----GGCAGa -5'
15864 5' -55.4 NC_004065.1 + 96662 0.67 0.956025
Target:  5'- uCGg---CGUCGGCGGGcucGCCCGa-- -3'
miRNA:   3'- -GCacaaGCAGCCGCCCuu-UGGGCaga -5'
15864 5' -55.4 NC_004065.1 + 146756 0.67 0.959603
Target:  5'- uGUGggCGUCGGCGGcGucuGCCgcaucuccauCGUCg -3'
miRNA:   3'- gCACaaGCAGCCGCC-Cuu-UGG----------GCAGa -5'
15864 5' -55.4 NC_004065.1 + 68323 0.66 0.965216
Target:  5'- gGUG-UCGUCGuggcuGCGGGAGcugcugcagcagcuGCCCGUg- -3'
miRNA:   3'- gCACaAGCAGC-----CGCCCUU--------------UGGGCAga -5'
15864 5' -55.4 NC_004065.1 + 36149 0.66 0.976922
Target:  5'- uGUGUUgGuggaUCGGCGGGAGucGCCgCGg-- -3'
miRNA:   3'- gCACAAgC----AGCCGCCCUU--UGG-GCaga -5'
15864 5' -55.4 NC_004065.1 + 224905 0.75 0.617355
Target:  5'- gGUG-UCGUCGGUGagcGGAGGCCCGUg- -3'
miRNA:   3'- gCACaAGCAGCCGC---CCUUUGGGCAga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.