miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 3' -58.3 NC_004065.1 + 130487 0.66 0.92684
Target:  5'- --cGCGG-CGa--GACGgGAGCGCCGa -3'
miRNA:   3'- gcuCGCCaGUgagCUGCgCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 33043 0.66 0.92684
Target:  5'- aCGA-CGGaUACgagGAUGCGGGCGCCGc -3'
miRNA:   3'- -GCUcGCCaGUGag-CUGCGCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 65357 0.66 0.92684
Target:  5'- uGGGuCGGUCGgaUCGACcuggGCGAcgcGCGCCGc -3'
miRNA:   3'- gCUC-GCCAGUg-AGCUG----CGCU---CGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 191553 0.66 0.921697
Target:  5'- aGGGCGGcUCACUCuuccgcACGCGuGCGgUGa -3'
miRNA:   3'- gCUCGCC-AGUGAGc-----UGCGCuCGUgGC- -5'
15865 3' -58.3 NC_004065.1 + 109901 0.66 0.921697
Target:  5'- uCGGGgGGUCccgGCUCGuccgcCGCGGcCGCCGu -3'
miRNA:   3'- -GCUCgCCAG---UGAGCu----GCGCUcGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 109785 0.66 0.921697
Target:  5'- aGGGCaGG-CGCUaCGcCGCGGGCACg- -3'
miRNA:   3'- gCUCG-CCaGUGA-GCuGCGCUCGUGgc -5'
15865 3' -58.3 NC_004065.1 + 42459 0.66 0.921697
Target:  5'- aGAcGCGGUCGCcaugcUGGCGCGAGUgguuCCc -3'
miRNA:   3'- gCU-CGCCAGUGa----GCUGCGCUCGu---GGc -5'
15865 3' -58.3 NC_004065.1 + 186118 0.66 0.921697
Target:  5'- -uGGCGG-CGCaUCGACGCGAuCuCCGa -3'
miRNA:   3'- gcUCGCCaGUG-AGCUGCGCUcGuGGC- -5'
15865 3' -58.3 NC_004065.1 + 102407 0.66 0.921697
Target:  5'- gCGAGCGGUgCACgua----GAGCGCCGg -3'
miRNA:   3'- -GCUCGCCA-GUGagcugcgCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 122531 0.66 0.921697
Target:  5'- gCGAGCGGUCGagCGACaGC-AGgGCCa -3'
miRNA:   3'- -GCUCGCCAGUgaGCUG-CGcUCgUGGc -5'
15865 3' -58.3 NC_004065.1 + 197288 0.66 0.921697
Target:  5'- uGGGCGGcuuCUCG-CGCGA-CGCCGc -3'
miRNA:   3'- gCUCGCCaguGAGCuGCGCUcGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 4632 0.66 0.91634
Target:  5'- gGAGCGG-CACcaUCaGCGCcAGCGCCc -3'
miRNA:   3'- gCUCGCCaGUG--AGcUGCGcUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 199201 0.66 0.91634
Target:  5'- uCGAG-GGUCGCgagGACGC--GCACCGc -3'
miRNA:   3'- -GCUCgCCAGUGag-CUGCGcuCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 88683 0.66 0.91634
Target:  5'- gCGAGCGGacgacguccgcgUCGuacaugacguuCUCGcgGCGCGAGCGgCGg -3'
miRNA:   3'- -GCUCGCC------------AGU-----------GAGC--UGCGCUCGUgGC- -5'
15865 3' -58.3 NC_004065.1 + 209967 0.66 0.91634
Target:  5'- aCGGGCGG---CUCGAgCGaGAGCACCc -3'
miRNA:   3'- -GCUCGCCaguGAGCU-GCgCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 34673 0.66 0.91634
Target:  5'- uCGuGuUGGcCACcuucaaGACGCGGGCGCCGc -3'
miRNA:   3'- -GCuC-GCCaGUGag----CUGCGCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 173926 0.66 0.91634
Target:  5'- cCGGGaCGGUCACgUCuGCuGCGAGCagaACCu -3'
miRNA:   3'- -GCUC-GCCAGUG-AGcUG-CGCUCG---UGGc -5'
15865 3' -58.3 NC_004065.1 + 173877 0.66 0.915792
Target:  5'- uCGAuGCGacUCGCUCGccgaggcugcagaAgGCGAGCGCCGc -3'
miRNA:   3'- -GCU-CGCc-AGUGAGC-------------UgCGCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 136644 0.66 0.914691
Target:  5'- gGAGCGGcguggaUC-CUgGugGCGAGCgacgggcgggucugGCCGg -3'
miRNA:   3'- gCUCGCC------AGuGAgCugCGCUCG--------------UGGC- -5'
15865 3' -58.3 NC_004065.1 + 202927 0.66 0.91077
Target:  5'- uCGAGCccGGUCgcgauacccuugACUCGACaCGAGUACaCGu -3'
miRNA:   3'- -GCUCG--CCAG------------UGAGCUGcGCUCGUG-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.