miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 3' -58.3 NC_004065.1 + 132429 0.66 0.91077
Target:  5'- -cGGCGGccUCcUUCGACGUGuuGCGCCGu -3'
miRNA:   3'- gcUCGCC--AGuGAGCUGCGCu-CGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 30147 0.66 0.91077
Target:  5'- gCGAcCGGcCGCUCGugcugUGCG-GCACCGa -3'
miRNA:   3'- -GCUcGCCaGUGAGCu----GCGCuCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 68041 0.66 0.904989
Target:  5'- aCGAGgGGUCGgUCGAaGCGAGagAUCa -3'
miRNA:   3'- -GCUCgCCAGUgAGCUgCGCUCg-UGGc -5'
15865 3' -58.3 NC_004065.1 + 59320 0.66 0.904989
Target:  5'- gGAGCGG-CAaucgCGcCGCGGGCGgCGu -3'
miRNA:   3'- gCUCGCCaGUga--GCuGCGCUCGUgGC- -5'
15865 3' -58.3 NC_004065.1 + 96119 0.66 0.904989
Target:  5'- uCGAgGCGGUCGCUC--CGCGAGgGuggcCCGu -3'
miRNA:   3'- -GCU-CGCCAGUGAGcuGCGCUCgU----GGC- -5'
15865 3' -58.3 NC_004065.1 + 41956 0.66 0.898998
Target:  5'- aCGGcCGGguuCUCGACGCuGGCGCUGa -3'
miRNA:   3'- -GCUcGCCaguGAGCUGCGcUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 197204 0.67 0.892799
Target:  5'- -uGGCGGUagaAgUCGcggaACGCGAGCAUCa -3'
miRNA:   3'- gcUCGCCAg--UgAGC----UGCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 113915 0.67 0.892799
Target:  5'- aGGGCGGagaUCGCgcgugucgaCGACGCG-GCGCuCGg -3'
miRNA:   3'- gCUCGCC---AGUGa--------GCUGCGCuCGUG-GC- -5'
15865 3' -58.3 NC_004065.1 + 186961 0.67 0.892799
Target:  5'- aCGuGCGGUCugUCG-CGcCGA-CGCCu -3'
miRNA:   3'- -GCuCGCCAGugAGCuGC-GCUcGUGGc -5'
15865 3' -58.3 NC_004065.1 + 196616 0.67 0.886397
Target:  5'- gCGAGUgucGGaugCGC-CGGgGCGAGCGCCu -3'
miRNA:   3'- -GCUCG---CCa--GUGaGCUgCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 132332 0.67 0.886397
Target:  5'- cCGGGCGGcgGCggcagCGAcCGCGAGUAUCa -3'
miRNA:   3'- -GCUCGCCagUGa----GCU-GCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 163646 0.67 0.886397
Target:  5'- gCGAGCGcaGcCGCUCGACGaucAGCgGCCGg -3'
miRNA:   3'- -GCUCGC--CaGUGAGCUGCgc-UCG-UGGC- -5'
15865 3' -58.3 NC_004065.1 + 169461 0.67 0.879793
Target:  5'- --cGCGGUCuuuCucuucgccgugaUCGugGCGGGUACCa -3'
miRNA:   3'- gcuCGCCAGu--G------------AGCugCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 169360 0.67 0.872991
Target:  5'- uGGGCcGUCugucaGCUCGACGCGugcguGGCGCgGg -3'
miRNA:   3'- gCUCGcCAG-----UGAGCUGCGC-----UCGUGgC- -5'
15865 3' -58.3 NC_004065.1 + 22403 0.67 0.8723
Target:  5'- gGAGCugucccuGGUCACcgUCGugGCGAucGUAUCGa -3'
miRNA:   3'- gCUCG-------CCAGUG--AGCugCGCU--CGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 86561 0.67 0.865997
Target:  5'- aCGGGC-GUCACgaCGACGCaGAGCGgCa -3'
miRNA:   3'- -GCUCGcCAGUGa-GCUGCG-CUCGUgGc -5'
15865 3' -58.3 NC_004065.1 + 169175 0.67 0.865997
Target:  5'- aCGGGcCGGUC--UCGAUGUGAGUguucGCCGc -3'
miRNA:   3'- -GCUC-GCCAGugAGCUGCGCUCG----UGGC- -5'
15865 3' -58.3 NC_004065.1 + 50435 0.67 0.865287
Target:  5'- aGGcGCGGUCGCacacgCGugGCGccccuucAGCGCCc -3'
miRNA:   3'- gCU-CGCCAGUGa----GCugCGC-------UCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 107183 0.67 0.858814
Target:  5'- aGGGCGGUCGa--GACGgGAGCcgucgACUGa -3'
miRNA:   3'- gCUCGCCAGUgagCUGCgCUCG-----UGGC- -5'
15865 3' -58.3 NC_004065.1 + 76714 0.68 0.851448
Target:  5'- aGAGCGcGUCGagguugcacucCUCGGCGgGgacgggcgcGGCGCCGg -3'
miRNA:   3'- gCUCGC-CAGU-----------GAGCUGCgC---------UCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.