miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 3' -58.3 NC_004065.1 + 122503 0.68 0.836188
Target:  5'- uGGGCGGUCGC-CG-CGC--GCACCu -3'
miRNA:   3'- gCUCGCCAGUGaGCuGCGcuCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 213483 0.69 0.760081
Target:  5'- gGAGCGGUCGCcgCGAcCGuCGA-CGCCa -3'
miRNA:   3'- gCUCGCCAGUGa-GCU-GC-GCUcGUGGc -5'
15865 3' -58.3 NC_004065.1 + 166161 0.69 0.786634
Target:  5'- -cAGCGG-CGC-CGACGuCGuGCACCGc -3'
miRNA:   3'- gcUCGCCaGUGaGCUGC-GCuCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 139918 0.69 0.795246
Target:  5'- cCGAGgGGUCGgUCGACGaacggaCGGGUACaCGc -3'
miRNA:   3'- -GCUCgCCAGUgAGCUGC------GCUCGUG-GC- -5'
15865 3' -58.3 NC_004065.1 + 67746 0.68 0.81945
Target:  5'- cCGAGCGGcgccgcgUCcgacggcgugACgaaCGGCGCGGGCGCCc -3'
miRNA:   3'- -GCUCGCC-------AG----------UGa--GCUGCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 141153 0.68 0.820263
Target:  5'- gCGGcGuCGGUCACuUCGACGUGA-CGCCu -3'
miRNA:   3'- -GCU-C-GCCAGUG-AGCUGCGCUcGUGGc -5'
15865 3' -58.3 NC_004065.1 + 128410 0.68 0.820263
Target:  5'- cCGAGCGG-CAg-CGGCgGCG-GCGCCGc -3'
miRNA:   3'- -GCUCGCCaGUgaGCUG-CGCuCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 36259 0.68 0.828305
Target:  5'- gGAGCGGcgcuuuUCGCUgGAgcaCGCGAGCAUUu -3'
miRNA:   3'- gCUCGCC------AGUGAgCU---GCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 91248 0.68 0.836188
Target:  5'- aGAGCGGgacCUUGACGCcaucGAccGCGCCGa -3'
miRNA:   3'- gCUCGCCaguGAGCUGCG----CU--CGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 200797 0.7 0.751018
Target:  5'- gCGGGCGacggCGuCUCGGCGCGGGgAUCGg -3'
miRNA:   3'- -GCUCGCca--GU-GAGCUGCGCUCgUGGC- -5'
15865 3' -58.3 NC_004065.1 + 74877 0.7 0.74186
Target:  5'- aCGGGCaGGUCGCagccgaccUCGuacuCGCGGGCGCgGa -3'
miRNA:   3'- -GCUCG-CCAGUG--------AGCu---GCGCUCGUGgC- -5'
15865 3' -58.3 NC_004065.1 + 66387 0.7 0.723295
Target:  5'- uCGAGCGGcugCGCUCgcugaccgaggaGACGCGcAGCAucCCGa -3'
miRNA:   3'- -GCUCGCCa--GUGAG------------CUGCGC-UCGU--GGC- -5'
15865 3' -58.3 NC_004065.1 + 173461 0.81 0.202384
Target:  5'- -uGGCGG-CGCUCGACGCcAGCACCGa -3'
miRNA:   3'- gcUCGCCaGUGAGCUGCGcUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 162302 0.78 0.324986
Target:  5'- aCGAGCGGUCGCUCGucACGgCGA-UACCGa -3'
miRNA:   3'- -GCUCGCCAGUGAGC--UGC-GCUcGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 30977 0.76 0.416673
Target:  5'- aCGAGUGGgaugCGCUCGccGCGuCGGGCGCUGa -3'
miRNA:   3'- -GCUCGCCa---GUGAGC--UGC-GCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 96846 0.76 0.425
Target:  5'- uCGAGaCGGcgcgCugUCGcCGCGGGCGCCGu -3'
miRNA:   3'- -GCUC-GCCa---GugAGCuGCGCUCGUGGC- -5'
15865 3' -58.3 NC_004065.1 + 161908 0.72 0.6178
Target:  5'- uCGAcCGGUCACUCGuCuCGAGuCACCGu -3'
miRNA:   3'- -GCUcGCCAGUGAGCuGcGCUC-GUGGC- -5'
15865 3' -58.3 NC_004065.1 + 65554 0.72 0.62748
Target:  5'- uGGGCGcGUCGCcggCGGguCGCGAGUACCu -3'
miRNA:   3'- gCUCGC-CAGUGa--GCU--GCGCUCGUGGc -5'
15865 3' -58.3 NC_004065.1 + 120556 0.71 0.704449
Target:  5'- -cGGCGG-CGgUCGGCGCGAGCGggcgggaccuCCGg -3'
miRNA:   3'- gcUCGCCaGUgAGCUGCGCUCGU----------GGC- -5'
15865 3' -58.3 NC_004065.1 + 145326 0.71 0.704449
Target:  5'- cCGAGCGa-CACUCGACacaGGGCGCCu -3'
miRNA:   3'- -GCUCGCcaGUGAGCUGcg-CUCGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.