miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 41420 0.65 0.985708
Target:  5'- cACGGUcgccgugacgGAC-CGAGACGGGgugcUGGCCGu -3'
miRNA:   3'- cUGCCA----------CUGaGCUCUGCUC----ACUGGCc -5'
15865 5' -55 NC_004065.1 + 27247 0.65 0.985708
Target:  5'- cAUGGUGAUcgauaUCGAagauGACGAGgacgaagaGACCGGc -3'
miRNA:   3'- cUGCCACUG-----AGCU----CUGCUCa-------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 139885 0.65 0.985708
Target:  5'- uGACGGUGGuC-CGGGugaGGGUGAUCGc -3'
miRNA:   3'- -CUGCCACU-GaGCUCug-CUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 19049 0.65 0.985708
Target:  5'- cGGCGGUGGCccacaucugUGAcGACGAGgaggaGACCGc -3'
miRNA:   3'- -CUGCCACUGa--------GCU-CUGCUCa----CUGGCc -5'
15865 5' -55 NC_004065.1 + 127243 0.66 0.984708
Target:  5'- cGCGGUGGCggggaugaugagcgCGAgcGAUGGGUcGCCGGc -3'
miRNA:   3'- cUGCCACUGa-------------GCU--CUGCUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 184805 0.66 0.984012
Target:  5'- gGACGGUGACgcaaCGGuGGCG-GUGGCgGc -3'
miRNA:   3'- -CUGCCACUGa---GCU-CUGCuCACUGgCc -5'
15865 5' -55 NC_004065.1 + 112299 0.66 0.984012
Target:  5'- aACGGUGcGCgcgCGAGAgacgcgaGGGUGACgGGu -3'
miRNA:   3'- cUGCCAC-UGa--GCUCUg------CUCACUGgCC- -5'
15865 5' -55 NC_004065.1 + 206844 0.66 0.982168
Target:  5'- cGGCGGggccgaccuGCUCGAGAaucgcugguuaCGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCac-------UGAGCUCU-----------GCUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 80604 0.66 0.982168
Target:  5'- gGACGGUacggaGAaaaUCGGGGCGGuUGcACCGGu -3'
miRNA:   3'- -CUGCCA-----CUg--AGCUCUGCUcAC-UGGCC- -5'
15865 5' -55 NC_004065.1 + 41429 0.66 0.981781
Target:  5'- cGACGaccGGCUCGAGAUGGacguccuuuugGGCCGGg -3'
miRNA:   3'- -CUGCca-CUGAGCUCUGCUca---------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 135155 0.66 0.980169
Target:  5'- cGACGGgGACgUCGAugacGACGAGgGACUGc -3'
miRNA:   3'- -CUGCCaCUG-AGCU----CUGCUCaCUGGCc -5'
15865 5' -55 NC_004065.1 + 186660 0.66 0.980169
Target:  5'- uACGucGUcGACUCG-GACGAGUG-UCGGg -3'
miRNA:   3'- cUGC--CA-CUGAGCuCUGCUCACuGGCC- -5'
15865 5' -55 NC_004065.1 + 172080 0.66 0.978007
Target:  5'- --aGGgGGCUgUGGGugGAGgGGCCGGg -3'
miRNA:   3'- cugCCaCUGA-GCUCugCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 117219 0.66 0.978007
Target:  5'- uGGCGGggacgGACgucgCGAG-CGAcaGACCGGu -3'
miRNA:   3'- -CUGCCa----CUGa---GCUCuGCUcaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 139633 0.66 0.978007
Target:  5'- aGCGGUGGCgugUCGAcGACGGGgaagGACuCGu -3'
miRNA:   3'- cUGCCACUG---AGCU-CUGCUCa---CUG-GCc -5'
15865 5' -55 NC_004065.1 + 229347 0.66 0.977782
Target:  5'- gGGCGGUcGCUCGAccagcgaGCGGGUGcucgcuacgcgcgGCCGGa -3'
miRNA:   3'- -CUGCCAcUGAGCUc------UGCUCAC-------------UGGCC- -5'
15865 5' -55 NC_004065.1 + 209224 0.66 0.975676
Target:  5'- gGACGaUGuuggaACUCGAGGCGAGUcuUCGGa -3'
miRNA:   3'- -CUGCcAC-----UGAGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 184875 0.67 0.97317
Target:  5'- cGGCGG-GACgcCGGGaACGAGagagGAUCGGg -3'
miRNA:   3'- -CUGCCaCUGa-GCUC-UGCUCa---CUGGCC- -5'
15865 5' -55 NC_004065.1 + 184918 0.67 0.97317
Target:  5'- --gGGUGGCUCGG---GAGcGGCCGGg -3'
miRNA:   3'- cugCCACUGAGCUcugCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 68241 0.67 0.967605
Target:  5'- cGGCGGUGACga-GGACG---GACCGGc -3'
miRNA:   3'- -CUGCCACUGagcUCUGCucaCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.