miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 75358 0.67 0.967605
Target:  5'- cGACGGUGcC-CGAGAgGAGcaGCUGGa -3'
miRNA:   3'- -CUGCCACuGaGCUCUgCUCacUGGCC- -5'
15865 5' -55 NC_004065.1 + 88907 0.67 0.964536
Target:  5'- cGACGGcgaagcUGACg-GAGACGAGcGAgCGGc -3'
miRNA:   3'- -CUGCC------ACUGagCUCUGCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 71739 0.67 0.964536
Target:  5'- cGACGGUGACgc--GGCGcuaccggucGGUGACCGu -3'
miRNA:   3'- -CUGCCACUGagcuCUGC---------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 3278 0.67 0.961269
Target:  5'- gGugGuguuGUGACUCGAGcaACG-GUGAUUGGa -3'
miRNA:   3'- -CugC----CACUGAGCUC--UGCuCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 3652 0.67 0.964536
Target:  5'- -cCGaGUGGCUCGAGGCGAG-GugUc- -3'
miRNA:   3'- cuGC-CACUGAGCUCUGCUCaCugGcc -5'
15865 5' -55 NC_004065.1 + 186626 0.67 0.967605
Target:  5'- -gUGGUGACgaUCGA-ACGGGUGGUCGGg -3'
miRNA:   3'- cuGCCACUG--AGCUcUGCUCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 184875 0.67 0.97317
Target:  5'- cGGCGG-GACgcCGGGaACGAGagagGAUCGGg -3'
miRNA:   3'- -CUGCCaCUGa-GCUC-UGCUCa---CUGGCC- -5'
15865 5' -55 NC_004065.1 + 38943 0.68 0.937282
Target:  5'- -uCGG-GugUCGAGcuCGAGcGACCGGc -3'
miRNA:   3'- cuGCCaCugAGCUCu-GCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 101933 0.68 0.954122
Target:  5'- aGACGGU--CUCGAagaagucGCGGGUGACCGc -3'
miRNA:   3'- -CUGCCAcuGAGCUc------UGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 162329 0.68 0.937282
Target:  5'- cGACGGUG-CUCGAcccccucauCGAGccgaucgGACCGGg -3'
miRNA:   3'- -CUGCCACuGAGCUcu-------GCUCa------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 200789 0.68 0.941373
Target:  5'- cGGCGGUGGCgggcgacggcgucUCGGcGCGGG-GAUCGGa -3'
miRNA:   3'- -CUGCCACUG-------------AGCUcUGCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 55652 0.68 0.941817
Target:  5'- aGACGG--GCUCGAGuCGGcacUGGCCGGu -3'
miRNA:   3'- -CUGCCacUGAGCUCuGCUc--ACUGGCC- -5'
15865 5' -55 NC_004065.1 + 50002 0.68 0.954122
Target:  5'- cACGGUG---CGAGACGAGU--CCGGg -3'
miRNA:   3'- cUGCCACugaGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 58600 0.68 0.944862
Target:  5'- cGACGGcgGAgUCGAGAUcgacgcgcgcggcgGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCa-CUgAGCUCUG--------------CUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 72460 0.68 0.945712
Target:  5'- uACGGUacGACgagCGAGACGGuGUcggcgcggcugaaGACCGGg -3'
miRNA:   3'- cUGCCA--CUGa--GCUCUGCU-CA-------------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 106028 0.69 0.920752
Target:  5'- cGGCGGUGAUcaucaacacgccgaUCGuGACcaagGAG-GACCGGg -3'
miRNA:   3'- -CUGCCACUG--------------AGCuCUG----CUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 136659 0.69 0.911299
Target:  5'- -cUGGUGGCgagCGAcgGGCGGGUcuGGCCGGc -3'
miRNA:   3'- cuGCCACUGa--GCU--CUGCUCA--CUGGCC- -5'
15865 5' -55 NC_004065.1 + 62370 0.69 0.932526
Target:  5'- cGGCGGUGGCggCGGGGguGGUGGCggCGGg -3'
miRNA:   3'- -CUGCCACUGa-GCUCUgcUCACUG--GCC- -5'
15865 5' -55 NC_004065.1 + 179674 0.69 0.916936
Target:  5'- aGCGGgggGGCUCGGGAuCGcggcGGUGGCCa- -3'
miRNA:   3'- cUGCCa--CUGAGCUCU-GC----UCACUGGcc -5'
15865 5' -55 NC_004065.1 + 6677 0.69 0.916936
Target:  5'- cGugGGaagguacgUGGCUgGuGGACGGGUGGCCGu -3'
miRNA:   3'- -CugCC--------ACUGAgC-UCUGCUCACUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.