miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 3278 0.67 0.961269
Target:  5'- gGugGuguuGUGACUCGAGcaACG-GUGAUUGGa -3'
miRNA:   3'- -CugC----CACUGAGCUC--UGCuCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 3652 0.67 0.964536
Target:  5'- -cCGaGUGGCUCGAGGCGAG-GugUc- -3'
miRNA:   3'- cuGC-CACUGAGCUCUGCUCaCugGcc -5'
15865 5' -55 NC_004065.1 + 6677 0.69 0.916936
Target:  5'- cGugGGaagguacgUGGCUgGuGGACGGGUGGCCGu -3'
miRNA:   3'- -CugCC--------ACUGAgC-UCUGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 19049 0.65 0.985708
Target:  5'- cGGCGGUGGCccacaucugUGAcGACGAGgaggaGACCGc -3'
miRNA:   3'- -CUGCCACUGa--------GCU-CUGCUCa----CUGGCc -5'
15865 5' -55 NC_004065.1 + 23607 0.71 0.865859
Target:  5'- aGGCGGUGAggCGggcAGGCGGGUGGaCGGg -3'
miRNA:   3'- -CUGCCACUgaGC---UCUGCUCACUgGCC- -5'
15865 5' -55 NC_004065.1 + 27247 0.65 0.985708
Target:  5'- cAUGGUGAUcgauaUCGAagauGACGAGgacgaagaGACCGGc -3'
miRNA:   3'- cUGCCACUG-----AGCU----CUGCUCa-------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 31890 0.69 0.922354
Target:  5'- -cUGGUGuACUCGAGAgCGGGccUGACgCGGc -3'
miRNA:   3'- cuGCCAC-UGAGCUCU-GCUC--ACUG-GCC- -5'
15865 5' -55 NC_004065.1 + 38943 0.68 0.937282
Target:  5'- -uCGG-GugUCGAGcuCGAGcGACCGGc -3'
miRNA:   3'- cuGCCaCugAGCUCu-GCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 41420 0.65 0.985708
Target:  5'- cACGGUcgccgugacgGAC-CGAGACGGGgugcUGGCCGu -3'
miRNA:   3'- cUGCCA----------CUGaGCUCUGCUC----ACUGGCc -5'
15865 5' -55 NC_004065.1 + 41429 0.66 0.981781
Target:  5'- cGACGaccGGCUCGAGAUGGacguccuuuugGGCCGGg -3'
miRNA:   3'- -CUGCca-CUGAGCUCUGCUca---------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 50002 0.68 0.954122
Target:  5'- cACGGUG---CGAGACGAGU--CCGGg -3'
miRNA:   3'- cUGCCACugaGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 55652 0.68 0.941817
Target:  5'- aGACGG--GCUCGAGuCGGcacUGGCCGGu -3'
miRNA:   3'- -CUGCCacUGAGCUCuGCUc--ACUGGCC- -5'
15865 5' -55 NC_004065.1 + 58600 0.68 0.944862
Target:  5'- cGACGGcgGAgUCGAGAUcgacgcgcgcggcgGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCa-CUgAGCUCUG--------------CUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 58986 0.7 0.898751
Target:  5'- uGGCGGUcuuguacGACUUGAGGCGAaaGGCCaGGg -3'
miRNA:   3'- -CUGCCA-------CUGAGCUCUGCUcaCUGG-CC- -5'
15865 5' -55 NC_004065.1 + 62370 0.69 0.932526
Target:  5'- cGGCGGUGGCggCGGGGguGGUGGCggCGGg -3'
miRNA:   3'- -CUGCCACUGa-GCUCUgcUCACUG--GCC- -5'
15865 5' -55 NC_004065.1 + 67381 0.7 0.89937
Target:  5'- uGACGGUcGGCgugcacaCGAGAgGGGUGAUCGu -3'
miRNA:   3'- -CUGCCA-CUGa------GCUCUgCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 67646 0.72 0.810974
Target:  5'- -cCGGUGGCgUCGAG-CGGGUGuCCGa -3'
miRNA:   3'- cuGCCACUG-AGCUCuGCUCACuGGCc -5'
15865 5' -55 NC_004065.1 + 68111 1.1 0.006371
Target:  5'- gGACGGUGACUCGAGACGAGUGACCGGu -3'
miRNA:   3'- -CUGCCACUGAGCUCUGCUCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 68241 0.67 0.967605
Target:  5'- cGGCGGUGACga-GGACG---GACCGGc -3'
miRNA:   3'- -CUGCCACUGagcUCUGCucaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 71739 0.67 0.964536
Target:  5'- cGACGGUGACgc--GGCGcuaccggucGGUGACCGu -3'
miRNA:   3'- -CUGCCACUGagcuCUGC---------UCACUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.