miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 162329 0.68 0.937282
Target:  5'- cGACGGUG-CUCGAcccccucauCGAGccgaucgGACCGGg -3'
miRNA:   3'- -CUGCCACuGAGCUcu-------GCUCa------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 164233 0.69 0.916936
Target:  5'- cGGCGGUGAagUCGGGAucUGAGgGAgCGGg -3'
miRNA:   3'- -CUGCCACUg-AGCUCU--GCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 169975 0.71 0.843386
Target:  5'- cGACGGguucgGAUUCgGGGACG-GUGACgGGc -3'
miRNA:   3'- -CUGCCa----CUGAG-CUCUGCuCACUGgCC- -5'
15865 5' -55 NC_004065.1 + 172080 0.66 0.978007
Target:  5'- --aGGgGGCUgUGGGugGAGgGGCCGGg -3'
miRNA:   3'- cugCCaCUGA-GCUCugCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 179674 0.69 0.916936
Target:  5'- aGCGGgggGGCUCGGGAuCGcggcGGUGGCCa- -3'
miRNA:   3'- cUGCCa--CUGAGCUCU-GC----UCACUGGcc -5'
15865 5' -55 NC_004065.1 + 184805 0.66 0.984012
Target:  5'- gGACGGUGACgcaaCGGuGGCG-GUGGCgGc -3'
miRNA:   3'- -CUGCCACUGa---GCU-CUGCuCACUGgCc -5'
15865 5' -55 NC_004065.1 + 184875 0.67 0.97317
Target:  5'- cGGCGG-GACgcCGGGaACGAGagagGAUCGGg -3'
miRNA:   3'- -CUGCCaCUGa-GCUC-UGCUCa---CUGGCC- -5'
15865 5' -55 NC_004065.1 + 184918 0.67 0.97317
Target:  5'- --gGGUGGCUCGG---GAGcGGCCGGg -3'
miRNA:   3'- cugCCACUGAGCUcugCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 185687 0.7 0.886584
Target:  5'- cGGCGGUGuuCUCugcacGGAUGcuGGUGACCGGu -3'
miRNA:   3'- -CUGCCACu-GAGc----UCUGC--UCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 186626 0.67 0.967605
Target:  5'- -gUGGUGACgaUCGA-ACGGGUGGUCGGg -3'
miRNA:   3'- cuGCCACUG--AGCUcUGCUCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 186660 0.66 0.980169
Target:  5'- uACGucGUcGACUCG-GACGAGUG-UCGGg -3'
miRNA:   3'- cUGC--CA-CUGAGCuCUGCUCACuGGCC- -5'
15865 5' -55 NC_004065.1 + 200789 0.68 0.941373
Target:  5'- cGGCGGUGGCgggcgacggcgucUCGGcGCGGG-GAUCGGa -3'
miRNA:   3'- -CUGCCACUG-------------AGCUcUGCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 201559 0.67 0.964536
Target:  5'- cGCGGccGACUCGAG-CGAGUaGCCu- -3'
miRNA:   3'- cUGCCa-CUGAGCUCuGCUCAcUGGcc -5'
15865 5' -55 NC_004065.1 + 206844 0.66 0.982168
Target:  5'- cGGCGGggccgaccuGCUCGAGAaucgcugguuaCGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCac-------UGAGCUCU-----------GCUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 209224 0.66 0.975676
Target:  5'- gGACGaUGuuggaACUCGAGGCGAGUcuUCGGa -3'
miRNA:   3'- -CUGCcAC-----UGAGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 225132 0.7 0.907811
Target:  5'- uGAUGG--GCUCGGGACGcggacgcuccuccugGGUGACCGa -3'
miRNA:   3'- -CUGCCacUGAGCUCUGC---------------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 229347 0.66 0.977782
Target:  5'- gGGCGGUcGCUCGAccagcgaGCGGGUGcucgcuacgcgcgGCCGGa -3'
miRNA:   3'- -CUGCCAcUGAGCUc------UGCUCAC-------------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.