miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 140565 0.72 0.827508
Target:  5'- aGCGGcgGGCUgGAGugGAGUGACg-- -3'
miRNA:   3'- cUGCCa-CUGAgCUCugCUCACUGgcc -5'
15865 5' -55 NC_004065.1 + 139885 0.65 0.985708
Target:  5'- uGACGGUGGuC-CGGGugaGGGUGAUCGc -3'
miRNA:   3'- -CUGCCACU-GaGCUCug-CUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 139633 0.66 0.978007
Target:  5'- aGCGGUGGCgugUCGAcGACGGGgaagGACuCGu -3'
miRNA:   3'- cUGCCACUG---AGCU-CUGCUCa---CUG-GCc -5'
15865 5' -55 NC_004065.1 + 138990 0.75 0.642757
Target:  5'- cGCGGUGcuacgaGCUCGGGACG-GUGGCCa- -3'
miRNA:   3'- cUGCCAC------UGAGCUCUGCuCACUGGcc -5'
15865 5' -55 NC_004065.1 + 136659 0.69 0.911299
Target:  5'- -cUGGUGGCgagCGAcgGGCGGGUcuGGCCGGc -3'
miRNA:   3'- cuGCCACUGa--GCU--CUGCUCA--CUGGCC- -5'
15865 5' -55 NC_004065.1 + 135155 0.66 0.980169
Target:  5'- cGACGGgGACgUCGAugacGACGAGgGACUGc -3'
miRNA:   3'- -CUGCCaCUG-AGCU----CUGCUCaCUGGCc -5'
15865 5' -55 NC_004065.1 + 127243 0.66 0.984708
Target:  5'- cGCGGUGGCggggaugaugagcgCGAgcGAUGGGUcGCCGGc -3'
miRNA:   3'- cUGCCACUGa-------------GCU--CUGCUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 117219 0.66 0.978007
Target:  5'- uGGCGGggacgGACgucgCGAG-CGAcaGACCGGu -3'
miRNA:   3'- -CUGCCa----CUGa---GCUCuGCUcaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 112299 0.66 0.984012
Target:  5'- aACGGUGcGCgcgCGAGAgacgcgaGGGUGACgGGu -3'
miRNA:   3'- cUGCCAC-UGa--GCUCUg------CUCACUGgCC- -5'
15865 5' -55 NC_004065.1 + 106028 0.69 0.920752
Target:  5'- cGGCGGUGAUcaucaacacgccgaUCGuGACcaagGAG-GACCGGg -3'
miRNA:   3'- -CUGCCACUG--------------AGCuCUG----CUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 101933 0.68 0.954122
Target:  5'- aGACGGU--CUCGAagaagucGCGGGUGACCGc -3'
miRNA:   3'- -CUGCCAcuGAGCUc------UGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 88907 0.67 0.964536
Target:  5'- cGACGGcgaagcUGACg-GAGACGAGcGAgCGGc -3'
miRNA:   3'- -CUGCC------ACUGagCUCUGCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 80604 0.66 0.982168
Target:  5'- gGACGGUacggaGAaaaUCGGGGCGGuUGcACCGGu -3'
miRNA:   3'- -CUGCCA-----CUg--AGCUCUGCUcAC-UGGCC- -5'
15865 5' -55 NC_004065.1 + 75358 0.67 0.967605
Target:  5'- cGACGGUGcC-CGAGAgGAGcaGCUGGa -3'
miRNA:   3'- -CUGCCACuGaGCUCUgCUCacUGGCC- -5'
15865 5' -55 NC_004065.1 + 74130 0.74 0.720548
Target:  5'- cACGaG-GACgUCGAGGCGGGUGcCCGGg -3'
miRNA:   3'- cUGC-CaCUG-AGCUCUGCUCACuGGCC- -5'
15865 5' -55 NC_004065.1 + 72460 0.68 0.945712
Target:  5'- uACGGUacGACgagCGAGACGGuGUcggcgcggcugaaGACCGGg -3'
miRNA:   3'- cUGCCA--CUGa--GCUCUGCU-CA-------------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 71936 0.7 0.879878
Target:  5'- uGACGGUGGCcuggUCgGAGGCGAcgccgccgGUGgaGCCGGg -3'
miRNA:   3'- -CUGCCACUG----AG-CUCUGCU--------CAC--UGGCC- -5'
15865 5' -55 NC_004065.1 + 71739 0.67 0.964536
Target:  5'- cGACGGUGACgc--GGCGcuaccggucGGUGACCGu -3'
miRNA:   3'- -CUGCCACUGagcuCUGC---------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 68241 0.67 0.967605
Target:  5'- cGGCGGUGACga-GGACG---GACCGGc -3'
miRNA:   3'- -CUGCCACUGagcUCUGCucaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 68111 1.1 0.006371
Target:  5'- gGACGGUGACUCGAGACGAGUGACCGGu -3'
miRNA:   3'- -CUGCCACUGAGCUCUGCUCACUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.