miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 71739 0.67 0.964536
Target:  5'- cGACGGUGACgc--GGCGcuaccggucGGUGACCGu -3'
miRNA:   3'- -CUGCCACUGagcuCUGC---------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 164233 0.69 0.916936
Target:  5'- cGGCGGUGAagUCGGGAucUGAGgGAgCGGg -3'
miRNA:   3'- -CUGCCACUg-AGCUCU--GCUCaCUgGCC- -5'
15865 5' -55 NC_004065.1 + 62370 0.69 0.932526
Target:  5'- cGGCGGUGGCggCGGGGguGGUGGCggCGGg -3'
miRNA:   3'- -CUGCCACUGa-GCUCUgcUCACUG--GCC- -5'
15865 5' -55 NC_004065.1 + 162329 0.68 0.937282
Target:  5'- cGACGGUG-CUCGAcccccucauCGAGccgaucgGACCGGg -3'
miRNA:   3'- -CUGCCACuGAGCUcu-------GCUCa------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 200789 0.68 0.941373
Target:  5'- cGGCGGUGGCgggcgacggcgucUCGGcGCGGG-GAUCGGa -3'
miRNA:   3'- -CUGCCACUG-------------AGCUcUGCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 55652 0.68 0.941817
Target:  5'- aGACGG--GCUCGAGuCGGcacUGGCCGGu -3'
miRNA:   3'- -CUGCCacUGAGCUCuGCUc--ACUGGCC- -5'
15865 5' -55 NC_004065.1 + 58600 0.68 0.944862
Target:  5'- cGACGGcgGAgUCGAGAUcgacgcgcgcggcgGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCa-CUgAGCUCUG--------------CUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 72460 0.68 0.945712
Target:  5'- uACGGUacGACgagCGAGACGGuGUcggcgcggcugaaGACCGGg -3'
miRNA:   3'- cUGCCA--CUGa--GCUCUGCU-CA-------------CUGGCC- -5'
15865 5' -55 NC_004065.1 + 50002 0.68 0.954122
Target:  5'- cACGGUG---CGAGACGAGU--CCGGg -3'
miRNA:   3'- cUGCCACugaGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 6677 0.69 0.916936
Target:  5'- cGugGGaagguacgUGGCUgGuGGACGGGUGGCCGu -3'
miRNA:   3'- -CugCC--------ACUGAgC-UCUGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 225132 0.7 0.907811
Target:  5'- uGAUGG--GCUCGGGACGcggacgcuccuccugGGUGACCGa -3'
miRNA:   3'- -CUGCCacUGAGCUCUGC---------------UCACUGGCc -5'
15865 5' -55 NC_004065.1 + 67381 0.7 0.89937
Target:  5'- uGACGGUcGGCgugcacaCGAGAgGGGUGAUCGu -3'
miRNA:   3'- -CUGCCA-CUGa------GCUCUgCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 74130 0.74 0.720548
Target:  5'- cACGaG-GACgUCGAGGCGGGUGcCCGGg -3'
miRNA:   3'- cUGC-CaCUG-AGCUCUGCUCACuGGCC- -5'
15865 5' -55 NC_004065.1 + 140565 0.72 0.827508
Target:  5'- aGCGGcgGGCUgGAGugGAGUGACg-- -3'
miRNA:   3'- cUGCCa-CUGAgCUCugCUCACUGgcc -5'
15865 5' -55 NC_004065.1 + 169975 0.71 0.843386
Target:  5'- cGACGGguucgGAUUCgGGGACG-GUGACgGGc -3'
miRNA:   3'- -CUGCCa----CUGAG-CUCUGCuCACUGgCC- -5'
15865 5' -55 NC_004065.1 + 161947 0.71 0.851063
Target:  5'- -uCGGUG-CUCGcGuCGAGUGACCGc -3'
miRNA:   3'- cuGCCACuGAGCuCuGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 23607 0.71 0.865859
Target:  5'- aGGCGGUGAggCGggcAGGCGGGUGGaCGGg -3'
miRNA:   3'- -CUGCCACUgaGC---UCUGCUCACUgGCC- -5'
15865 5' -55 NC_004065.1 + 71936 0.7 0.879878
Target:  5'- uGACGGUGGCcuggUCgGAGGCGAcgccgccgGUGgaGCCGGg -3'
miRNA:   3'- -CUGCCACUG----AG-CUCUGCU--------CAC--UGGCC- -5'
15865 5' -55 NC_004065.1 + 185687 0.7 0.886584
Target:  5'- cGGCGGUGuuCUCugcacGGAUGcuGGUGACCGGu -3'
miRNA:   3'- -CUGCCACu-GAGc----UCUGC--UCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 58986 0.7 0.898751
Target:  5'- uGGCGGUcuuguacGACUUGAGGCGAaaGGCCaGGg -3'
miRNA:   3'- -CUGCCA-------CUGAGCUCUGCUcaCUGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.