Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15865 | 5' | -55 | NC_004065.1 | + | 138990 | 0.75 | 0.642757 |
Target: 5'- cGCGGUGcuacgaGCUCGGGACG-GUGGCCa- -3' miRNA: 3'- cUGCCAC------UGAGCUCUGCuCACUGGcc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 74130 | 0.74 | 0.720548 |
Target: 5'- cACGaG-GACgUCGAGGCGGGUGcCCGGg -3' miRNA: 3'- cUGC-CaCUG-AGCUCUGCUCACuGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 140565 | 0.72 | 0.827508 |
Target: 5'- aGCGGcgGGCUgGAGugGAGUGACg-- -3' miRNA: 3'- cUGCCa-CUGAgCUCugCUCACUGgcc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 169975 | 0.71 | 0.843386 |
Target: 5'- cGACGGguucgGAUUCgGGGACG-GUGACgGGc -3' miRNA: 3'- -CUGCCa----CUGAG-CUCUGCuCACUGgCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 161947 | 0.71 | 0.851063 |
Target: 5'- -uCGGUG-CUCGcGuCGAGUGACCGc -3' miRNA: 3'- cuGCCACuGAGCuCuGCUCACUGGCc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 23607 | 0.71 | 0.865859 |
Target: 5'- aGGCGGUGAggCGggcAGGCGGGUGGaCGGg -3' miRNA: 3'- -CUGCCACUgaGC---UCUGCUCACUgGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 71936 | 0.7 | 0.879878 |
Target: 5'- uGACGGUGGCcuggUCgGAGGCGAcgccgccgGUGgaGCCGGg -3' miRNA: 3'- -CUGCCACUG----AG-CUCUGCU--------CAC--UGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 185687 | 0.7 | 0.886584 |
Target: 5'- cGGCGGUGuuCUCugcacGGAUGcuGGUGACCGGu -3' miRNA: 3'- -CUGCCACu-GAGc----UCUGC--UCACUGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 58986 | 0.7 | 0.898751 |
Target: 5'- uGGCGGUcuuguacGACUUGAGGCGAaaGGCCaGGg -3' miRNA: 3'- -CUGCCA-------CUGAGCUCUGCUcaCUGG-CC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 67381 | 0.7 | 0.89937 |
Target: 5'- uGACGGUcGGCgugcacaCGAGAgGGGUGAUCGu -3' miRNA: 3'- -CUGCCA-CUGa------GCUCUgCUCACUGGCc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 55652 | 0.68 | 0.941817 |
Target: 5'- aGACGG--GCUCGAGuCGGcacUGGCCGGu -3' miRNA: 3'- -CUGCCacUGAGCUCuGCUc--ACUGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 200789 | 0.68 | 0.941373 |
Target: 5'- cGGCGGUGGCgggcgacggcgucUCGGcGCGGG-GAUCGGa -3' miRNA: 3'- -CUGCCACUG-------------AGCUcUGCUCaCUGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 162329 | 0.68 | 0.937282 |
Target: 5'- cGACGGUG-CUCGAcccccucauCGAGccgaucgGACCGGg -3' miRNA: 3'- -CUGCCACuGAGCUcu-------GCUCa------CUGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 62370 | 0.69 | 0.932526 |
Target: 5'- cGGCGGUGGCggCGGGGguGGUGGCggCGGg -3' miRNA: 3'- -CUGCCACUGa-GCUCUgcUCACUG--GCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 164233 | 0.69 | 0.916936 |
Target: 5'- cGGCGGUGAagUCGGGAucUGAGgGAgCGGg -3' miRNA: 3'- -CUGCCACUg-AGCUCU--GCUCaCUgGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 6677 | 0.69 | 0.916936 |
Target: 5'- cGugGGaagguacgUGGCUgGuGGACGGGUGGCCGu -3' miRNA: 3'- -CugCC--------ACUGAgC-UCUGCUCACUGGCc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 225132 | 0.7 | 0.907811 |
Target: 5'- uGAUGG--GCUCGGGACGcggacgcuccuccugGGUGACCGa -3' miRNA: 3'- -CUGCCacUGAGCUCUGC---------------UCACUGGCc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 41420 | 0.65 | 0.985708 |
Target: 5'- cACGGUcgccgugacgGAC-CGAGACGGGgugcUGGCCGu -3' miRNA: 3'- cUGCCA----------CUGaGCUCUGCUC----ACUGGCc -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 146827 | 0.75 | 0.623081 |
Target: 5'- cACGGggGACUCGAGAgCGGGccGCCGGg -3' miRNA: 3'- cUGCCa-CUGAGCUCU-GCUCacUGGCC- -5' |
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15865 | 5' | -55 | NC_004065.1 | + | 67646 | 0.72 | 0.810974 |
Target: 5'- -cCGGUGGCgUCGAG-CGGGUGuCCGa -3' miRNA: 3'- cuGCCACUG-AGCUCuGCUCACuGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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