miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15865 5' -55 NC_004065.1 + 209224 0.66 0.975676
Target:  5'- gGACGaUGuuggaACUCGAGGCGAGUcuUCGGa -3'
miRNA:   3'- -CUGCcAC-----UGAGCUCUGCUCAcuGGCC- -5'
15865 5' -55 NC_004065.1 + 172080 0.66 0.978007
Target:  5'- --aGGgGGCUgUGGGugGAGgGGCCGGg -3'
miRNA:   3'- cugCCaCUGA-GCUCugCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 186660 0.66 0.980169
Target:  5'- uACGucGUcGACUCG-GACGAGUG-UCGGg -3'
miRNA:   3'- cUGC--CA-CUGAGCuCUGCUCACuGGCC- -5'
15865 5' -55 NC_004065.1 + 206844 0.66 0.982168
Target:  5'- cGGCGGggccgaccuGCUCGAGAaucgcugguuaCGAGUcGCCGGu -3'
miRNA:   3'- -CUGCCac-------UGAGCUCU-----------GCUCAcUGGCC- -5'
15865 5' -55 NC_004065.1 + 184805 0.66 0.984012
Target:  5'- gGACGGUGACgcaaCGGuGGCG-GUGGCgGc -3'
miRNA:   3'- -CUGCCACUGa---GCU-CUGCuCACUGgCc -5'
15865 5' -55 NC_004065.1 + 3278 0.67 0.961269
Target:  5'- gGugGuguuGUGACUCGAGcaACG-GUGAUUGGa -3'
miRNA:   3'- -CugC----CACUGAGCUC--UGCuCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 101933 0.68 0.954122
Target:  5'- aGACGGU--CUCGAagaagucGCGGGUGACCGc -3'
miRNA:   3'- -CUGCCAcuGAGCUc------UGCUCACUGGCc -5'
15865 5' -55 NC_004065.1 + 38943 0.68 0.937282
Target:  5'- -uCGG-GugUCGAGcuCGAGcGACCGGc -3'
miRNA:   3'- cuGCCaCugAGCUCu-GCUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 68111 1.1 0.006371
Target:  5'- gGACGGUGACUCGAGACGAGUGACCGGu -3'
miRNA:   3'- -CUGCCACUGAGCUCUGCUCACUGGCC- -5'
15865 5' -55 NC_004065.1 + 146827 0.75 0.623081
Target:  5'- cACGGggGACUCGAGAgCGGGccGCCGGg -3'
miRNA:   3'- cUGCCa-CUGAGCUCU-GCUCacUGGCC- -5'
15865 5' -55 NC_004065.1 + 67646 0.72 0.810974
Target:  5'- -cCGGUGGCgUCGAG-CGGGUGuCCGa -3'
miRNA:   3'- cuGCCACUG-AGCUCuGCUCACuGGCc -5'
15865 5' -55 NC_004065.1 + 144503 0.7 0.872968
Target:  5'- aGACGGcGACUUcGGGCGcGGcGACCGGa -3'
miRNA:   3'- -CUGCCaCUGAGcUCUGC-UCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 136659 0.69 0.911299
Target:  5'- -cUGGUGGCgagCGAcgGGCGGGUcuGGCCGGc -3'
miRNA:   3'- cuGCCACUGa--GCU--CUGCUCA--CUGGCC- -5'
15865 5' -55 NC_004065.1 + 179674 0.69 0.916936
Target:  5'- aGCGGgggGGCUCGGGAuCGcggcGGUGGCCa- -3'
miRNA:   3'- cUGCCa--CUGAGCUCU-GC----UCACUGGcc -5'
15865 5' -55 NC_004065.1 + 106028 0.69 0.920752
Target:  5'- cGGCGGUGAUcaucaacacgccgaUCGuGACcaagGAG-GACCGGg -3'
miRNA:   3'- -CUGCCACUG--------------AGCuCUG----CUCaCUGGCC- -5'
15865 5' -55 NC_004065.1 + 31890 0.69 0.922354
Target:  5'- -cUGGUGuACUCGAGAgCGGGccUGACgCGGc -3'
miRNA:   3'- cuGCCAC-UGAGCUCU-GCUC--ACUG-GCC- -5'
15865 5' -55 NC_004065.1 + 41420 0.65 0.985708
Target:  5'- cACGGUcgccgugacgGAC-CGAGACGGGgugcUGGCCGu -3'
miRNA:   3'- cUGCCA----------CUGaGCUCUGCUC----ACUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.